Variant report

Variant	esv3354847
Chromosome Location	chr19:39810812-39812410
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:88)
CpG islands
(count:244)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:88 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr19:39810917-39811347	H1-hESC	embryonic stem cell:	n/a	n/a
2	BCL3	chr19:39810846-39811268	A549	lung:	n/a	chr19:39811159-39811167
3	BHLHE40	chr19:39811145-39811338	K562	blood:	n/a	n/a
4	BHLHE40	chr19:39811289-39811391	GM12878	blood:	n/a	n/a
5	CCNT2	chr19:39811046-39811545	K562	blood:	n/a	n/a
6	CREB1	chr19:39810859-39811532	A549	lung:	n/a	n/a
7	CTCF	chr19:39811243-39811367	MCF-7	breast:	n/a	n/a
8	CTCF	chr19:39811220-39811370	GM12865	blood:	n/a	n/a
9	CTCF	chr19:39811184-39811187	MCF-7	breast:	n/a	n/a
10	CTCF	chr19:39811387-39811394	LNCaP	prostate:	n/a	n/a
11	CTCF	chr19:39811196-39811407	MCF-7	breast:	n/a	n/a
12	CTCF	chr19:39811221-39811370	MCF-7	breast:	n/a	n/a
13	CTCF	chr19:39811334-39811366	Fibrobl	skin:	n/a	n/a
14	CTCF	chr19:39811344-39811382	LNCaP	prostate:	n/a	n/a
15	CTCF	chr19:39811980-39812130	GM12871	blood:	n/a	n/a
16	CTCF	chr19:39811235-39811240	MCF-7	breast:	n/a	n/a
17	CTCF	chr19:39811188-39811195	MCF-7	breast:	n/a	n/a
18	E2F6	chr19:39811035-39811610	K562	blood:	n/a	n/a
19	EGR1	chr19:39811246-39811494	K562	blood:	n/a	n/a
20	EGR1	chr19:39811236-39811518	K562	blood:	n/a	n/a
21	EP300	chr19:39811904-39811971	GM12878	blood:	n/a	n/a
22	ETS1	chr19:39811192-39811381	K562	blood:	n/a	n/a
23	ETS1	chr19:39811131-39811458	K562	blood:	n/a	n/a
24	FOXP2	chr19:39811081-39811474	PFSK-1	brain:	n/a	n/a
25	GABPA	chr19:39810936-39811348	K562	blood:	n/a	n/a
26	HMGN3	chr19:39810787-39811511	K562	blood:	n/a	n/a
27	IRF1	chr19:39811086-39811172	K562	blood:	n/a	n/a
28	JUND	chr19:39810873-39811595	A549	lung:	n/a	n/a
29	MAX	chr19:39811153-39811314	A549	lung:	n/a	n/a
30	MAX	chr19:39810658-39811676	A549	lung:	n/a	chr19:39810741-39810751 chr19:39810809-39810818
31	MAX	chr19:39810815-39811445	MCF-7	breast:	n/a	n/a
32	MAX	chr19:39810981-39811547	ECC-1	luminal epithelium:	n/a	n/a
33	MAX	chr19:39810916-39811407	K562	blood:	n/a	n/a
34	MAX	chr19:39810799-39811548	A549	lung:	n/a	chr19:39810809-39810818
35	MAX	chr19:39810999-39811177	K562	blood:	n/a	n/a
36	MAX	chr19:39810691-39811550	K562	blood:	n/a	chr19:39810741-39810751 chr19:39810809-39810818
37	MAZ	chr19:39811236-39811481	GM12878	blood:	n/a	n/a
38	MAZ	chr19:39810836-39811992	K562	blood:	n/a	n/a
39	MAZ	chr19:39810645-39812178	IMR90	lung:	n/a	chr19:39810741-39810751 chr19:39810809-39810818
40	MXI1	chr19:39811292-39811374	GM12878	blood:	n/a	n/a
41	MXI1	chr19:39809950-39811697	SK-N-SH	brain:	n/a	n/a
42	MYC	chr19:39810914-39811497	MCF-7	breast:	n/a	n/a
43	MYC	chr19:39811192-39811491	K562	blood:	n/a	n/a
44	MYC	chr19:39810843-39811526	K562	blood:	n/a	n/a
45	MYC	chr19:39811056-39811373	MCF-7	breast:	n/a	n/a
46	MYC	chr19:39810882-39811370	K562	blood:	n/a	n/a
47	MYC	chr19:39810994-39811405	MCF-7	breast:	n/a	n/a
48	PAX5	chr19:39811173-39811447	GM12892	blood:	n/a	n/a
49	POLR2A	chr19:39811164-39811519	A549	lung:	n/a	n/a
50	POLR2A	chr19:39811213-39811548	ECC-1	luminal epithelium:	n/a	n/a

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:39811358-39811408	AG10803	skin:	n/a
2	chr19:39811073-39811123	GM06990	blood:	n/a
3	chr19:39811332-39811382	RPTEC	kidney:	n/a
4	chr19:39810872-39810922	PrEC	prostate:	n/a
5	chr19:39811332-39811382	NHDF-neo	bronchial:	n/a
6	chr19:39811358-39811408	HCM	heart:	n/a
7	chr19:39811358-39811408	CMK	blood:	n/a
8	chr19:39811073-39811123	GM19239	blood:	n/a
9	chr19:39811332-39811382	PrEC	prostate:	n/a
10	chr19:39811332-39811382	NB4	blood:	n/a
11	chr19:39811332-39811382	SK-N-SH	brain:	n/a
12	chr19:39811332-39811382	HEK293	kidney:	embryo
13	chr19:39811073-39811123	HepG2	liver:	n/a
14	chr19:39810872-39810922	NH-A	brain:	n/a
15	chr19:39811073-39811123	CMK	blood:	n/a
16	chr19:39811358-39811408	NT2-D1	testis:	n/a
17	chr19:39810872-39810922	BE2_C	brain:	n/a
18	chr19:39811332-39811382	ProgFib	skin:	n/a
19	chr19:39810872-39810922	AG09319	gingival:	n/a
20	chr19:39810872-39810922	IMR90	lung:	fetal
21	chr19:39811073-39811123	U87	brain:	n/a
22	chr19:39811332-39811382	ECC-1	luminal epithelium:	n/a
23	chr19:39811073-39811123	SAEC	small airway:	n/a
24	chr19:39811073-39811123	MCF-7	breast:	n/a
25	chr19:39811073-39811123	GM12892	blood:	n/a
26	chr19:39810872-39810922	HCM	heart:	n/a
27	chr19:39811332-39811382	A549	lung:	n/a
28	chr19:39811332-39811382	AG04450	lung:	fetal
29	chr19:39811073-39811123	NH-A	brain:	n/a
30	chr19:39811073-39811123	HRCEpiC	kidney:	n/a
31	chr19:39811332-39811382	HepG2	liver:	n/a
32	chr19:39811073-39811123	SK-N-SH	brain:	n/a
33	chr19:39811073-39811123	AG10803	skin:	n/a
34	chr19:39811358-39811408	MCF-7	breast:	n/a
35	chr19:39811332-39811382	Hepatocyte	liver:	n/a
36	chr19:39811073-39811123	HRPEpiC	eye:	n/a
37	chr19:39810872-39810922	GM12892	blood:	n/a
38	chr19:39811332-39811382	HAEpiC	amniotic membrane:	n/a
39	chr19:39811073-39811123	HEK293	kidney:	embryo
40	chr19:39810872-39810922	SK-N-MC	brain:	n/a
41	chr19:39811073-39811123	HPAEpiC	pulmonary alveolar:	n/a
42	chr19:39811358-39811408	T-47D	breast:	n/a
43	chr19:39810872-39810922	BJ	skin:	n/a
44	chr19:39811332-39811382	HCM	heart:	n/a
45	chr19:39810872-39810922	PANC-1	pancreas:	n/a
46	chr19:39811073-39811123	Jurkat	blood:	n/a
47	chr19:39811358-39811408	ECC-1	luminal epithelium:	n/a
48	chr19:39811332-39811382	BJ	skin:	n/a
49	chr19:39811073-39811123	HCF	heart:	n/a
50	chr19:39810872-39810922	HRPEpiC	eye:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:39341602..39344396-chr19:39810637..39813386,2	K562	blood:
2	chr19:39803732..39806747-chr19:39808288..39811295,3	MCF-7	breast:
3	chr19:39684826..39687710-chr19:39809011..39811329,2	K562	blood:
4	chr19:39809900..39813494-chr19:39831059..39834441,3	MCF-7	breast:
5	chr19:39811404..39814084-chr19:39901271..39903376,2	MCF-7	breast:
6	chr19:39811372..39812878-chr19:39831167..39833886,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000268262	TF binding region
LRFN1	TF binding region
ENSG00000268262	CpG island
LRFN1	CpG island
ENSG00000188505	chromatin interactions
ENSG00000090924	chromatin interactions
ENSG00000128011	chromatin interactions
ENSG00000104824	chromatin interactions
ENSG00000179134	chromatin interactions
ENSG00000130755	chromatin interactions
ENSG00000269246	chromatin interactions

Extended variants
information (count: 34 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs148824983	chr19:39810927-39810928	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
2	rs550302196	chr19:39810928-39810929	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
3	rs568875140	chr19:39810934-39810935	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
4	rs569532005	chr19:39810935-39810936	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
5	rs35232910	chr19:39810945-39810946	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
6	rs374081302	chr19:39810946-39810947	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
7	rs71169584	chr19:39810982-39810983	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
8	rs530577309	chr19:39811008-39811009	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
9	rs551979222	chr19:39811021-39811022	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
10	rs570539523	chr19:39811041-39811042	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
11	rs534465131	chr19:39811091-39811092	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
12	rs552773010	chr19:39811108-39811109	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
13	rs567980488	chr19:39811180-39811181	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
14	rs535348870	chr19:39811207-39811208	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
15	rs556864412	chr19:39811293-39811294	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
16	rs251914	chr19:39811302-39811303	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs543838759	chr19:39811456-39811457	Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
18	rs111220091	chr19:39811506-39811507	Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
19	rs558741431	chr19:39811640-39811641	Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
20	rs251911	chr19:39811724-39811725	Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
21	rs577268548	chr19:39811825-39811826	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
22	rs62122891	chr19:39811827-39811828	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs560001631	chr19:39811848-39811849	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
24	rs573444394	chr19:39811859-39811860	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
25	rs542540356	chr19:39811932-39811933	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
26	rs564053172	chr19:39811967-39811968	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
27	rs142282004	chr19:39812010-39812011	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
28	rs552155889	chr19:39812228-39812229	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
29	rs563999206	chr19:39812310-39812311	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
30	rs79790590	chr19:39812315-39812316	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
31	rs534406055	chr19:39812344-39812345	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
32	rs567892703	chr19:39812348-39812349	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
33	rs559137049	chr19:39812381-39812382	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
34	rs146357888	chr19:39812408-39812409	Bivalent Enhancer Weak transcription Enhancers	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Lung cancer	21569311	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21509527	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:297 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39800600-39811000	Weak transcription	Small Intestine	intestine
2	chr19:39809600-39811000	Enhancers	Spleen	Spleen
3	chr19:39809600-39811200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr19:39809600-39811200	Enhancers	Fetal Heart	heart
5	chr19:39809800-39811200	Flanking Active TSS	Dnd41	blood
6	chr19:39809800-39812000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr19:39809800-39812200	Active TSS	Brain Cingulate Gyrus	brain
8	chr19:39810000-39811000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr19:39810000-39812000	Active TSS	Brain Anterior Caudate	brain
10	chr19:39810200-39811000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
11	chr19:39810200-39811000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr19:39810200-39811000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
13	chr19:39810200-39811200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr19:39810200-39811200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr19:39810200-39811200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
16	chr19:39810200-39811200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:39810200-39811200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr19:39810200-39811200	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr19:39810200-39811200	Enhancers	Fetal Lung	lung
20	chr19:39810200-39812200	Active TSS	Fetal Kidney	kidney
21	chr19:39810400-39811000	Flanking Active TSS	A549	lung
22	chr19:39810400-39811200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
23	chr19:39810400-39811200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
24	chr19:39810400-39811200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chr19:39810400-39811200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr19:39810400-39811200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr19:39810400-39811200	Flanking Active TSS	Fetal Stomach	stomach
28	chr19:39810400-39811200	Flanking Active TSS	Pancreas	Pancrea
29	chr19:39810400-39811200	Flanking Active TSS	Thymus	Thymus
30	chr19:39810400-39811400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
31	chr19:39810400-39811400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr19:39810400-39811400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
33	chr19:39810400-39811800	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr19:39810400-39812000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:39810400-39812000	Active TSS	Brain Angular Gyrus	brain
36	chr19:39810400-39812000	Enhancers	Placenta	Placenta
37	chr19:39810400-39812200	Active TSS	H9 Cell Line	embryonic stem cell
38	chr19:39810400-39812200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
39	chr19:39810400-39812200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr19:39810600-39811000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr19:39810600-39811000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
42	chr19:39810600-39811000	Flanking Active TSS	Fetal Muscle Leg	muscle
43	chr19:39810600-39811000	Enhancers	Lung	lung
44	chr19:39810600-39811000	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr19:39810600-39811200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr19:39810600-39811200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr19:39810600-39811200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr19:39810600-39811200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
49	chr19:39810600-39811200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr19:39810600-39811200	Flanking Active TSS	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links