Variant report

Variant	rs552155889
Chromosome Location	chr19:39812228-39812229
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr19:39811727-39812359	K562	blood:	n/a	chr19:39812350-39812358
2	ZBTB7A	chr19:39810552-39812252	ECC-1	luminal epithelium:	n/a	n/a
3	ZBTB7A	chr19:39811839-39812323	K562	blood:	n/a	n/a
4	ZBTB7A	chr19:39811323-39812722	ECC-1	luminal epithelium:	n/a	chr19:39812350-39812358

No.	Distal block	Cell Line	Cell type
1	chr19:39811404..39814084-chr19:39901271..39903376,2	MCF-7	breast:
2	chr19:39341602..39344396-chr19:39810637..39813386,2	K562	blood:
3	chr19:39809900..39813494-chr19:39831059..39834441,3	MCF-7	breast:
4	chr19:39811372..39812878-chr19:39831167..39833886,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000268262	TF binding region
ENSG00000269246	Chromatin interaction
ENSG00000104824	Chromatin interaction
ENSG00000130755	Chromatin interaction
ENSG00000179134	Chromatin interaction
ENSG00000090924	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432048	chr19:39572060-39850060	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833830	chr19:39709538-39837846	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
3	nsv911679	chr19:39735106-39924129	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	198 gene(s)	inside rSNPs	diseases
4	nsv1058514	chr19:39744112-39902580	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
5	nsv911680	chr19:39792460-39924129	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	194 gene(s)	inside rSNPs	diseases
6	nsv911681	chr19:39797716-39856246	Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	esv3373441	chr19:39810537-39813085	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	esv3429395	chr19:39810562-39812810	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	esv3354847	chr19:39810812-39812410	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
10	esv10629	chr19:39811570-39886212	Flanking Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39811200-39812400	Enhancers	Primary T cells fromperipheralblood	blood
2	chr19:39811200-39812400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr19:39811200-39817600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr19:39811200-39817800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr19:39811200-39819600	Weak transcription	GM12878-XiMat	blood
6	chr19:39811400-39812400	Enhancers	Primary T cells from cord blood	blood
7	chr19:39811400-39812400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr19:39811400-39812600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr19:39811400-39816800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr19:39811400-39817600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr19:39811400-39825800	Weak transcription	Gastric	stomach
12	chr19:39811600-39812400	Enhancers	Lung	lung
13	chr19:39811600-39812600	Enhancers	Primary B cells from peripheral blood	blood
14	chr19:39811800-39812400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:39812000-39812400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
16	chr19:39812000-39812400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr19:39812000-39812400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr19:39812000-39812400	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
19	chr19:39812000-39813600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr19:39812000-39816400	Weak transcription	Thymus	Thymus
21	chr19:39812000-39816600	Weak transcription	Primary B cells from cord blood	blood
22	chr19:39812000-39816600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr19:39812000-39817000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr19:39812000-39817000	Weak transcription	Placenta	Placenta
25	chr19:39812000-39817600	Weak transcription	Adipose Nuclei	Adipose
26	chr19:39812000-39818200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr19:39812000-39825600	Weak transcription	Right Ventricle	heart
28	chr19:39812200-39812400	Enhancers	Fetal Brain Female	brain
29	chr19:39812200-39812800	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
30	chr19:39812200-39812800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr19:39812200-39814000	Weak transcription	Pancreas	Pancrea
32	chr19:39812200-39815800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr19:39812200-39816400	Weak transcription	Spleen	Spleen
34	chr19:39812200-39816400	Weak transcription	Dnd41	blood
35	chr19:39812200-39816600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr19:39812200-39816600	Weak transcription	Fetal Thymus	thymus
37	chr19:39812200-39817000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr19:39812200-39817000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr19:39812200-39817600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr19:39812200-39818200	Weak transcription	A549	lung
41	chr19:39812200-39818400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr19:39812200-39818600	Weak transcription	K562	blood

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