Variant report

Variant	rs1803710
Chromosome Location	chr6:11184867-11184868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11181022..11183446-chr6:11183581..11185850,2	MCF-7	breast:
2	chr6:11182279..11185693-chr6:11230831..11233757,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1007741	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12209631	1.00[CHB][hapmap]
rs13849	0.91[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2208840	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2327338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4711193	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4711194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4713227	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4713228	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4713229	0.85[EUR][1000 genomes]
rs6456968	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6906952	1.00[CHB][hapmap]
rs6912556	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6923725	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7739880	0.93[CEU][hapmap]
rs7746976	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7750787	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7755052	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7755536	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7770498	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9283888	0.85[EUR][1000 genomes]
rs9295806	0.85[EUR][1000 genomes]
rs9468537	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9468556	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs960944	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs960945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11162400-11185400	Weak transcription	Esophagus	oesophagus
2	chr6:11171800-11185400	Weak transcription	Gastric	stomach
3	chr6:11172800-11195000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:11173200-11185400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:11173200-11185400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:11173200-11185400	Weak transcription	Ovary	ovary
7	chr6:11173200-11187600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:11173400-11185400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:11173400-11185400	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:11173400-11185600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr6:11174000-11185000	Weak transcription	Fetal Heart	heart
12	chr6:11174800-11185400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:11175000-11185400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:11178400-11190000	Weak transcription	Brain Anterior Caudate	brain
15	chr6:11179000-11202200	Weak transcription	Brain Substantia Nigra	brain
16	chr6:11180000-11185400	Weak transcription	Brain Angular Gyrus	brain
17	chr6:11180200-11185600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:11180200-11190200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:11180200-11194600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:11180400-11185000	Weak transcription	Fetal Brain Male	brain
21	chr6:11180600-11185400	Weak transcription	Stomach Mucosa	stomach
22	chr6:11180600-11194400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:11180800-11185000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr6:11180800-11194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:11181000-11185600	Weak transcription	HMEC	breast
26	chr6:11181600-11196200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:11182000-11185400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:11182000-11187800	Weak transcription	NHDF-Ad	bronchial
29	chr6:11182000-11194000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:11182200-11188400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:11182200-11190000	Weak transcription	Fetal Lung	lung
32	chr6:11182400-11185400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr6:11182400-11194000	Strong transcription	NH-A	brain
34	chr6:11182400-11195200	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr6:11182600-11185400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:11182600-11185800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:11182600-11194800	Strong transcription	Primary B cells from cord blood	blood
38	chr6:11182800-11185200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:11182800-11185400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr6:11182800-11185600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:11182800-11187800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:11183000-11185200	Weak transcription	Fetal Intestine Small	intestine
43	chr6:11183000-11199000	Strong transcription	Primary B cells from peripheral blood	blood
44	chr6:11183200-11185000	Enhancers	Pancreatic Islets	Pancreatic Islet
45	chr6:11183200-11195000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr6:11183400-11185400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr6:11183400-11191800	Strong transcription	Fetal Thymus	thymus
48	chr6:11183400-11194000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:11183400-11194000	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:11183400-11194000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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