Variant report

Variant	rs6912556
Chromosome Location	chr6:11186225-11186226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11176076..11178026-chr6:11185179..11186965,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf228-5	chr6:11185908-11187371	l_3110_chr6:11152806-11187371_testes

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1007741	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10601	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13849	0.90[CEU][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1803710	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2146344	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2208840	0.88[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327336	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327338	0.88[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3035	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34044517	1.00[ASN][1000 genomes]
rs4711193	0.84[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711194	0.83[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713227	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4713228	0.88[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4713229	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456946	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456968	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923556	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923725	0.88[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935824	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746976	0.85[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750787	0.88[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751344	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755052	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755536	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759674	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770498	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283888	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295806	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9368595	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468537	0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468556	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960944	0.88[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960945	0.88[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11172800-11195000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:11173200-11187600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:11178400-11190000	Weak transcription	Brain Anterior Caudate	brain
4	chr6:11179000-11202200	Weak transcription	Brain Substantia Nigra	brain
5	chr6:11180200-11190200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:11180200-11194600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:11180600-11194400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:11180800-11194800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:11181600-11196200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:11182000-11187800	Weak transcription	NHDF-Ad	bronchial
11	chr6:11182000-11194000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:11182200-11188400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:11182200-11190000	Weak transcription	Fetal Lung	lung
14	chr6:11182400-11194000	Strong transcription	NH-A	brain
15	chr6:11182400-11195200	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr6:11182600-11194800	Strong transcription	Primary B cells from cord blood	blood
17	chr6:11182800-11187800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:11183000-11199000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr6:11183200-11195000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:11183400-11191800	Strong transcription	Fetal Thymus	thymus
21	chr6:11183400-11194000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:11183400-11194000	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:11183400-11194000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:11183400-11194000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:11183400-11194600	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:11183400-11194600	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr6:11183400-11195000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:11183600-11187400	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr6:11183600-11187600	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:11183600-11187800	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr6:11183600-11188200	Strong transcription	Osteobl	bone
32	chr6:11183600-11188400	Strong transcription	HSMM	muscle
33	chr6:11183600-11192400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:11183600-11194200	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:11183800-11186400	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr6:11183800-11188200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:11183800-11188200	Strong transcription	HepG2	liver
38	chr6:11183800-11189400	Weak transcription	NHEK	skin
39	chr6:11183800-11194000	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:11184000-11186400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:11184000-11186600	Strong transcription	Spleen	Spleen
42	chr6:11184000-11188800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:11184000-11192200	Strong transcription	Fetal Brain Female	brain
44	chr6:11184000-11192400	Strong transcription	Fetal Kidney	kidney
45	chr6:11184000-11192600	Strong transcription	Rectal Smooth Muscle	rectum
46	chr6:11184000-11194000	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr6:11184000-11194000	Strong transcription	Primary T cells from cord blood	blood
48	chr6:11184000-11194000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:11184000-11194000	Strong transcription	Adipose Nuclei	Adipose
50	chr6:11184000-11194000	Strong transcription	Duodenum Mucosa	Duodenum

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