Variant report

Variant	rs9368595
Chromosome Location	chr6:11150648-11150649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11148103..11150715-chr6:11171456..11173969,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000247925	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1007741	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10601	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13849	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146344	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2208840	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327336	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2327338	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3035	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34044517	1.00[ASN][1000 genomes]
rs4711193	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711194	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713227	0.83[EUR][1000 genomes]
rs4713228	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4713229	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456946	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456968	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912556	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923556	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923725	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739880	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7746976	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750787	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751344	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755052	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755536	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759674	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770498	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283888	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295806	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468537	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468556	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960944	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs960945	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11129000-11154200	Weak transcription	Fetal Intestine Small	intestine
2	chr6:11136000-11154400	Weak transcription	Left Ventricle	heart
3	chr6:11136600-11154400	Weak transcription	Primary T cells from cord blood	blood
4	chr6:11137800-11154000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:11145000-11172800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:11145200-11150800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:11146000-11154000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:11146800-11154200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:11147000-11153800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:11147200-11151200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:11147200-11151200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:11147400-11154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:11148600-11154200	Weak transcription	Right Atrium	heart
14	chr6:11150200-11154200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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