Variant report

Variant	rs1805750
Chromosome Location	chr12:9144713-9144714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11048354	1.00[EUR][1000 genomes]
rs28769384	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4882972	0.83[EUR][1000 genomes]
rs4882973	0.85[EUR][1000 genomes]
rs7311244	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	esv2754892	chr12:9136351-9179007	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9133800-9164600	Weak transcription	Psoas Muscle	Psoas
2	chr12:9133800-9170200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr12:9141600-9145600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:9141800-9144800	Active TSS	Primary T cells fromperipheralblood	blood
5	chr12:9141800-9144800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
6	chr12:9142400-9168000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr12:9142800-9145200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr12:9142800-9149000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr12:9143000-9146400	Enhancers	Primary hematopoietic stem cells	blood
10	chr12:9143600-9144800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr12:9143600-9145400	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr12:9143600-9146000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr12:9144000-9144800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr12:9144000-9145000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr12:9144000-9145600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr12:9144200-9145000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr12:9144200-9145000	Active TSS	Right Atrium	heart
18	chr12:9144200-9145200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr12:9144200-9145200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr12:9144200-9145200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr12:9144400-9144800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chr12:9144400-9144800	Flanking Active TSS	Adipose Nuclei	Adipose
23	chr12:9144400-9144800	Enhancers	GM12878-XiMat	blood
24	chr12:9144400-9144800	Flanking Active TSS	HUVEC	blood vessel
25	chr12:9144400-9145000	Enhancers	Thymus	Thymus
26	chr12:9144400-9145200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr12:9144400-9145200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr12:9144400-9145200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr12:9144400-9145200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr12:9144400-9145200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr12:9144600-9145400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr12:9144600-9145400	Enhancers	Placenta	Placenta
33	chr12:9144600-9145400	Enhancers	Fetal Thymus	thymus

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