Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1049948	1.00[ASN][1000 genomes]
rs11048354	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12297905	1.00[ASN][1000 genomes]
rs12313493	1.00[ASN][1000 genomes]
rs12313494	1.00[ASN][1000 genomes]
rs12314142	1.00[ASN][1000 genomes]
rs12314310	1.00[ASN][1000 genomes]
rs12317136	1.00[ASN][1000 genomes]
rs16917943	1.00[ASN][1000 genomes]
rs16917957	1.00[ASN][1000 genomes]
rs1805696	1.00[ASN][1000 genomes]
rs1805750	0.83[EUR][1000 genomes]
rs28769384	1.00[ASN][1000 genomes]
rs3026237	1.00[ASN][1000 genomes]
rs3026240	1.00[ASN][1000 genomes]
rs4882972	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4882973	1.00[ASN][1000 genomes]
rs4882974	1.00[ASN][1000 genomes]
rs4883207	1.00[ASN][1000 genomes]
rs4883210	1.00[ASN][1000 genomes]
rs56759930	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296548	1.00[ASN][1000 genomes]
rs7310680	1.00[ASN][1000 genomes]
rs7312460	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv819596	chr12:9113514-9141537	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9121400-9132600	Weak transcription	Psoas Muscle	Psoas
2	chr12:9122000-9123600	Enhancers	HepG2	liver
3	chr12:9122000-9133000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr12:9122600-9123400	Enhancers	Primary T cells from cord blood	blood
5	chr12:9122600-9123400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:9122800-9123400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:9122800-9123400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr12:9122800-9123600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr12:9122800-9128200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

Quick Search: