Variant report

Variant	rs4883210
Chromosome Location	chr12:9185843-9185844
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9100702..9103487-chr12:9184337..9186342,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000003056	Chromatin interaction
ENSG00000139187	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1049948	1.00[ASN][1000 genomes]
rs11048354	1.00[ASN][1000 genomes]
rs12297905	1.00[ASN][1000 genomes]
rs12313493	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12313494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314142	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12317136	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917943	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16917957	1.00[CEU][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805696	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1805707	0.85[YRI][hapmap]
rs28769384	1.00[ASN][1000 genomes]
rs3026237	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3026240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4882972	1.00[ASN][1000 genomes]
rs4882973	1.00[ASN][1000 genomes]
rs4882974	1.00[ASN][1000 genomes]
rs4883205	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4883207	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56759930	1.00[ASN][1000 genomes]
rs7296548	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7310680	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7311244	1.00[ASN][1000 genomes]
rs7312460	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9178400-9216400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:9182800-9186600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:9183000-9186400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr12:9183000-9186600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr12:9183600-9187000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr12:9183800-9189200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr12:9184400-9189600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr12:9185000-9186400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr12:9185000-9186400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
10	chr12:9185200-9186200	Enhancers	Primary T cells from cord blood	blood
11	chr12:9185200-9186800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr12:9185600-9186000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr12:9185600-9187000	Enhancers	HepG2	liver
14	chr12:9185600-9187200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:9185600-9189000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr12:9185600-9189800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr12:9185800-9186200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr12:9185800-9189200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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