Variant report

Variant	rs7312460
Chromosome Location	chr12:9111095-9111096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9103372..9104890-chr12:9110140..9112943,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHC1-1	chr12:9110019-9111918	refGeneNc_2621_NR_026971

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1049948	1.00[ASN][1000 genomes]
rs11048354	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12297905	1.00[ASN][1000 genomes]
rs12313493	1.00[ASN][1000 genomes]
rs12313494	1.00[ASN][1000 genomes]
rs12314142	1.00[ASN][1000 genomes]
rs12314310	1.00[ASN][1000 genomes]
rs12317136	1.00[ASN][1000 genomes]
rs16917943	1.00[ASN][1000 genomes]
rs16917957	1.00[ASN][1000 genomes]
rs1805696	1.00[ASN][1000 genomes]
rs28769384	1.00[ASN][1000 genomes]
rs3026237	1.00[ASN][1000 genomes]
rs3026240	1.00[ASN][1000 genomes]
rs4882972	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4882973	1.00[ASN][1000 genomes]
rs4882974	1.00[ASN][1000 genomes]
rs4883207	1.00[ASN][1000 genomes]
rs4883210	1.00[ASN][1000 genomes]
rs56759930	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296548	1.00[ASN][1000 genomes]
rs7310680	1.00[ASN][1000 genomes]
rs7311244	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9103400-9112000	Weak transcription	Pancreas	Pancrea
2	chr12:9103400-9116400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:9103600-9114000	Weak transcription	Fetal Kidney	kidney
4	chr12:9103600-9114200	Weak transcription	Aorta	Aorta
5	chr12:9103600-9114400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:9103600-9114600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr12:9104000-9113200	Weak transcription	HepG2	liver
8	chr12:9104000-9114400	Weak transcription	Psoas Muscle	Psoas
9	chr12:9104400-9111200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr12:9104600-9113800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr12:9105000-9113600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr12:9105000-9113800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr12:9106600-9116000	Weak transcription	Left Ventricle	heart
14	chr12:9106800-9112200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr12:9106800-9114400	Enhancers	Primary T cells fromperipheralblood	blood
16	chr12:9106800-9114600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr12:9107000-9111200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr12:9107200-9112800	Enhancers	Primary T cells from cord blood	blood
19	chr12:9107200-9112800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr12:9107400-9112600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr12:9107400-9112600	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr12:9107400-9112800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr12:9108600-9115200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr12:9109000-9111400	Weak transcription	Fetal Muscle Leg	muscle
25	chr12:9109000-9113400	Weak transcription	Right Ventricle	heart
26	chr12:9109000-9114600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr12:9109000-9115600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr12:9109000-9121600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr12:9109400-9112600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr12:9109400-9113800	Enhancers	Fetal Thymus	thymus
31	chr12:9109600-9114800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr12:9110200-9111400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr12:9110400-9112000	Weak transcription	Thymus	Thymus
34	chr12:9110400-9112600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr12:9110600-9114200	Weak transcription	K562	blood
36	chr12:9111000-9115600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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