Variant report

Variant	rs1805828
Chromosome Location	chr8:90983599-90983600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90980689..90982635-chr8:90982915..90985587,2	MCF-7	breast:
2	chr8:90963205..90965219-chr8:90983143..90985297,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13312853	0.83[AMR][1000 genomes]
rs13312883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312894	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312905	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312925	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312937	0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312951	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16902376	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs16902465	0.83[AMR][1000 genomes]
rs1805814	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805821	0.83[AMR][1000 genomes]
rs1805827	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805839	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1805843	0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs1805845	0.83[AMR][1000 genomes]
rs1805887	0.83[AMR][1000 genomes]
rs73306482	0.97[AFR][1000 genomes]
rs73308410	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
2	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:90944800-90984400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:90962000-90994400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr8:90962000-90995000	Weak transcription	Aorta	Aorta
8	chr8:90965000-90984200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:90970600-90988200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:90970800-90988200	Weak transcription	Pancreas	Pancrea
11	chr8:90970800-90993200	Weak transcription	Psoas Muscle	Psoas
12	chr8:90971000-90994000	Weak transcription	Brain Substantia Nigra	brain
13	chr8:90971200-90994400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:90971400-90993800	Weak transcription	Small Intestine	intestine
15	chr8:90971800-90995600	Weak transcription	Right Ventricle	heart
16	chr8:90973600-90988400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:90973800-90993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:90974200-90986800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr8:90974200-90993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr8:90975600-90988400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr8:90975600-90993800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:90975600-90993800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:90975600-90994000	Weak transcription	Brain Angular Gyrus	brain
24	chr8:90975600-90995800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr8:90975800-90988400	Weak transcription	HMEC	breast
26	chr8:90975800-90993200	Weak transcription	NHDF-Ad	bronchial
27	chr8:90976000-90993800	Weak transcription	Fetal Heart	heart
28	chr8:90976200-90984800	Weak transcription	HSMMtube	muscle
29	chr8:90976200-90993600	Weak transcription	Brain Hippocampus Middle	brain
30	chr8:90976200-90993800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr8:90976200-90993800	Weak transcription	Brain Germinal Matrix	brain
32	chr8:90976200-90995800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr8:90976400-90986600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:90976400-90986600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr8:90976400-90986600	Weak transcription	NHLF	lung
36	chr8:90976400-90986800	Weak transcription	Spleen	Spleen
37	chr8:90976400-90990000	Weak transcription	Lung	lung
38	chr8:90976400-90993600	Weak transcription	NHEK	skin
39	chr8:90976400-90993800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr8:90976400-90994400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr8:90976400-90995400	Weak transcription	Thymus	Thymus
42	chr8:90976400-90995600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr8:90976400-90995800	Weak transcription	Esophagus	oesophagus
44	chr8:90976600-90986600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr8:90976600-90987000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr8:90976600-90990000	Weak transcription	A549	lung
47	chr8:90976600-90994400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr8:90976800-90988200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr8:90976800-90993400	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr8:90977000-90984000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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