Variant report

Variant	rs1805887
Chromosome Location	chr8:91041739-91041740
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13312853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13312883	0.83[AMR][1000 genomes]
rs13312894	0.83[AMR][1000 genomes]
rs13312897	0.83[AMR][1000 genomes]
rs13312905	0.83[AMR][1000 genomes]
rs13312925	0.83[AMR][1000 genomes]
rs13312937	0.83[AMR][1000 genomes]
rs13312951	0.83[AMR][1000 genomes]
rs16902376	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16902465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16902840	0.83[AMR][1000 genomes]
rs1805814	0.83[AMR][1000 genomes]
rs1805819	0.83[AMR][1000 genomes]
rs1805821	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805827	0.83[AMR][1000 genomes]
rs1805828	0.83[AMR][1000 genomes]
rs1805843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805845	1.00[AMR][1000 genomes]
rs1805910	0.83[AMR][1000 genomes]
rs7017507	0.83[AMR][1000 genomes]
rs73308410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308442	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91014600-91045600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:91014800-91042400	Weak transcription	Colonic Mucosa	Colon
3	chr8:91015600-91066200	Weak transcription	Hela-S3	cervix
4	chr8:91018600-91065400	Weak transcription	HMEC	breast
5	chr8:91019000-91057000	Weak transcription	Fetal Brain Female	brain
6	chr8:91019800-91048600	Weak transcription	K562	blood
7	chr8:91022800-91042000	Weak transcription	Pancreas	Pancrea
8	chr8:91027600-91066800	Weak transcription	NHEK	skin
9	chr8:91029400-91066000	Weak transcription	HUVEC	blood vessel
10	chr8:91030000-91049600	Weak transcription	Small Intestine	intestine
11	chr8:91030000-91057400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:91032000-91042000	Weak transcription	Thymus	Thymus
13	chr8:91032000-91042200	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:91032000-91049000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr8:91032000-91050800	Weak transcription	Esophagus	oesophagus
16	chr8:91032000-91050800	Weak transcription	NHDF-Ad	bronchial
17	chr8:91032000-91051800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:91032000-91057000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:91032000-91064000	Weak transcription	Fetal Brain Male	brain
20	chr8:91032000-91064800	Weak transcription	NHLF	lung
21	chr8:91032200-91042000	Weak transcription	Lung	lung
22	chr8:91032200-91051400	Weak transcription	Brain Substantia Nigra	brain
23	chr8:91032200-91057400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:91032400-91042000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr8:91032400-91042200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr8:91032400-91049200	Weak transcription	Brain Angular Gyrus	brain
27	chr8:91032400-91049200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr8:91032400-91051200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr8:91032400-91054400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr8:91032600-91042200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:91032600-91049200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr8:91033000-91049600	Weak transcription	Fetal Intestine Small	intestine
33	chr8:91033000-91049600	Weak transcription	Fetal Stomach	stomach
34	chr8:91033600-91045600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr8:91033800-91042000	Weak transcription	Fetal Kidney	kidney
36	chr8:91033800-91042600	Weak transcription	Fetal Heart	heart
37	chr8:91033800-91064400	Weak transcription	NH-A	brain
38	chr8:91034000-91042200	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr8:91034200-91056000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr8:91034600-91042000	Weak transcription	Aorta	Aorta
41	chr8:91034600-91049000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr8:91034800-91041800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:91034800-91042600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr8:91034800-91042600	Weak transcription	HSMMtube	muscle
45	chr8:91034800-91048600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr8:91034800-91049200	Weak transcription	Placenta	Placenta
47	chr8:91035000-91042000	Weak transcription	Psoas Muscle	Psoas
48	chr8:91035000-91042000	Weak transcription	Right Ventricle	heart
49	chr8:91035000-91049000	Weak transcription	Brain Hippocampus Middle	brain
50	chr8:91035000-91057000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links