Variant report

Variant	rs73308442
Chromosome Location	chr8:91073959-91073960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12675530	0.89[AFR][1000 genomes]
rs13312853	0.83[AMR][1000 genomes]
rs16902376	0.83[AMR][1000 genomes]
rs16902465	0.83[AMR][1000 genomes]
rs16902840	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16904012	0.81[AFR][1000 genomes]
rs1805821	0.83[AMR][1000 genomes]
rs1805843	0.83[AMR][1000 genomes]
rs1805845	0.83[AMR][1000 genomes]
rs1805887	0.83[AMR][1000 genomes]
rs1805910	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58769148	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60917017	0.82[AFR][1000 genomes]
rs6980740	0.88[AFR][1000 genomes]
rs7017507	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291278	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73291282	0.96[AFR][1000 genomes]
rs73291299	0.83[AFR][1000 genomes]
rs73308364	0.90[AFR][1000 genomes]
rs73308410	0.83[AMR][1000 genomes]
rs7817950	0.82[AFR][1000 genomes]
rs7822497	0.96[AFR][1000 genomes]
rs7834706	0.82[AFR][1000 genomes]
rs909190	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91055600-91074600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr8:91057800-91093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:91058000-91085800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:91058200-91080200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr8:91058600-91078000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:91059000-91074400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:91059000-91084800	Weak transcription	Brain Anterior Caudate	brain
8	chr8:91066200-91083800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:91068000-91093200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:91068800-91074400	Weak transcription	HSMM	muscle
11	chr8:91069600-91074400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:91073400-91093600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr8:91073800-91075200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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