Variant report

Variant	rs7822497
Chromosome Location	chr8:91113616-91113617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10091400	1.00[MEX][hapmap]
rs12675530	1.00[ASW][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs13312937	0.82[ASW][hapmap]
rs13312973	1.00[MEX][hapmap]
rs13312981	1.00[MEX][hapmap]
rs16902376	0.82[ASW][hapmap];0.83[MKK][hapmap]
rs16902840	1.00[LWK][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes]
rs16903948	1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs16904012	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805843	0.83[MKK][hapmap]
rs1805910	0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs57684907	0.85[AMR][1000 genomes]
rs58769148	0.99[AFR][1000 genomes]
rs59269419	0.85[AMR][1000 genomes]
rs60917017	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6980740	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7000851	1.00[MEX][hapmap]
rs7017507	0.90[AFR][1000 genomes]
rs73291278	1.00[AFR][1000 genomes]
rs73291282	1.00[AFR][1000 genomes]
rs73291299	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73293212	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73308357	0.87[AMR][1000 genomes]
rs73308360	0.87[AMR][1000 genomes]
rs73308364	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308442	0.96[AFR][1000 genomes]
rs7817950	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834706	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs909190	0.92[AFR][1000 genomes]
rs9693170	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91110000-91114000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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