Variant report

Variant	rs16904012
Chromosome Location	chr8:91168249-91168250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91166036..91168487-chr8:91169692..91172196,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12675530	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs16902840	0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs16903948	0.93[YRI][hapmap];0.87[AMR][1000 genomes]
rs1805910	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs57684907	0.85[AMR][1000 genomes]
rs58769148	0.84[AFR][1000 genomes]
rs59269419	0.85[AMR][1000 genomes]
rs60917017	0.85[AMR][1000 genomes]
rs6980740	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7017507	0.81[AFR][1000 genomes]
rs73291278	0.85[AFR][1000 genomes]
rs73291282	0.85[AFR][1000 genomes]
rs73291299	0.87[AMR][1000 genomes]
rs73293212	0.87[AMR][1000 genomes]
rs73308357	0.87[AMR][1000 genomes]
rs73308360	0.87[AMR][1000 genomes]
rs73308364	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73308442	0.81[AFR][1000 genomes]
rs7817950	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7822497	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7834706	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs909190	0.88[AFR][1000 genomes]
rs9693170	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv824687	chr8:91144854-91177488	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv35109	chr8:91150726-91226940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv818643	chr8:91153308-91212148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91163200-91176600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:91167400-91170600	Enhancers	HMEC	breast
3	chr8:91167600-91168400	Enhancers	NHEK	skin
4	chr8:91167600-91170400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:91167800-91168600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr8:91168200-91168800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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