Variant report

Variant	rs58769148
Chromosome Location	chr8:91102107-91102108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12675530	0.92[AFR][1000 genomes]
rs16902840	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs16904012	0.84[AFR][1000 genomes]
rs1805910	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60917017	0.87[AFR][1000 genomes]
rs6980740	0.90[AFR][1000 genomes]
rs7017507	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73291278	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73291282	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73291299	0.86[AFR][1000 genomes]
rs73293212	0.81[AFR][1000 genomes]
rs73308364	0.93[AFR][1000 genomes]
rs73308442	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7817950	0.85[AFR][1000 genomes]
rs7822497	0.99[AFR][1000 genomes]
rs7834706	0.85[AFR][1000 genomes]
rs909190	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91100600-91102200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91100600-91102400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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