Variant report

Variant	rs1806795
Chromosome Location	chr15:75422744-75422745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75416113..75419586-chr15:75420394..75423438,3	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1021382	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10775208	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11072525	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11072526	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11072528	0.82[AMR][1000 genomes]
rs12102035	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12442392	0.82[AMR][1000 genomes]
rs12914536	0.82[AMR][1000 genomes]
rs12917304	0.80[EUR][1000 genomes]
rs1602360	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1806793	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1806794	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2029519	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2415159	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28767543	0.90[AMR][1000 genomes]
rs34511319	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4243032	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4334268	0.80[EUR][1000 genomes]
rs4479194	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4886422	0.88[AMR][1000 genomes]
rs4886658	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4886661	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55662404	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6495153	0.82[AMR][1000 genomes]
rs6495155	0.82[AMR][1000 genomes]
rs7163083	0.82[AMR][1000 genomes]
rs7172205	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7172677	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7177528	0.81[EUR][1000 genomes]
rs7178005	0.82[AMR][1000 genomes]
rs7178784	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7179426	0.81[AMR][1000 genomes]
rs7179436	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7181933	0.81[AMR][1000 genomes]
rs72730601	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8026273	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8029756	0.82[AMR][1000 genomes]
rs8029760	0.82[AMR][1000 genomes]
rs8032208	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8033754	0.82[AMR][1000 genomes]
rs8035789	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75401200-75430600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:75412800-75433600	Weak transcription	Aorta	Aorta
3	chr15:75415000-75425400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr15:75415400-75423000	Enhancers	Primary hematopoietic stem cells	blood
5	chr15:75416400-75424000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr15:75417600-75423200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:75417800-75430600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:75418800-75423000	Weak transcription	Lung	lung
9	chr15:75420200-75423000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:75420200-75423200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:75420800-75423000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr15:75420800-75423200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:75421000-75422800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr15:75421000-75423600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:75421600-75423800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr15:75421800-75424000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr15:75421800-75424600	Enhancers	Primary B cells from cord blood	blood
18	chr15:75422000-75423400	Enhancers	Fetal Thymus	thymus
19	chr15:75422000-75424600	Enhancers	Hela-S3	cervix
20	chr15:75422200-75423000	Enhancers	Colonic Mucosa	Colon
21	chr15:75422200-75423200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:75422200-75424000	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr15:75422400-75422800	Enhancers	GM12878-XiMat	blood
24	chr15:75422400-75424400	Weak transcription	HepG2	liver
25	chr15:75422600-75423000	Weak transcription	Adipose Nuclei	Adipose
26	chr15:75422600-75423800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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