Variant report

Variant	rs2415159
Chromosome Location	chr15:75430715-75430716
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1021382	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10775208	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10851877	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10851878	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11072525	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11072526	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072528	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11638746	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12102035	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12442392	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12442410	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12910348	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12914536	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12917185	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12917304	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1602360	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1806793	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1806794	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1806795	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2029519	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2029520	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2415158	0.93[ASN][1000 genomes]
rs28767543	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34511319	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4243032	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4334268	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4421941	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4479194	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4480765	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4886420	0.83[ASN][1000 genomes]
rs4886422	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886658	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4886661	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4886667	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4886668	0.94[CHB][hapmap];0.88[JPT][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4886669	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs55662404	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58201389	0.95[ASN][1000 genomes]
rs59390721	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6495153	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6495154	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6495155	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6495158	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7162055	0.94[ASN][1000 genomes]
rs7162376	0.93[ASN][1000 genomes]
rs7163083	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7166695	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7168020	0.91[ASN][1000 genomes]
rs7169545	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7169867	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7172205	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7172677	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7177528	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7178005	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7178625	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7178784	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7179426	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7179436	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7181933	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72730601	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8025412	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8026273	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8027552	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8027604	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8028146	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8029756	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8029760	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8032208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033754	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8035588	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8035789	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
8	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	nsv525506	chr15:75430526-75431795	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75412800-75433600	Weak transcription	Aorta	Aorta
2	chr15:75423400-75431600	Weak transcription	Lung	lung
3	chr15:75427800-75431800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr15:75428000-75430800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:75428000-75431200	Enhancers	HepG2	liver
6	chr15:75428800-75432600	Weak transcription	Right Atrium	heart
7	chr15:75429000-75430800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:75429000-75431400	Enhancers	GM12878-XiMat	blood
9	chr15:75429400-75431600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr15:75429600-75430800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr15:75429800-75430800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:75429800-75431800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:75430000-75431600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:75430200-75430800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:75430200-75431400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr15:75430200-75431400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:75430200-75431600	Enhancers	Fetal Muscle Leg	muscle
18	chr15:75430200-75431800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:75430200-75431800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
20	chr15:75430200-75432000	Enhancers	Placenta	Placenta
21	chr15:75430200-75433000	Enhancers	Ovary	ovary
22	chr15:75430400-75430800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:75430400-75430800	Enhancers	NHDF-Ad	bronchial
24	chr15:75430400-75431200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr15:75430400-75431600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr15:75430400-75431600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:75430400-75431600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:75430400-75431600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:75430400-75431600	Enhancers	Fetal Muscle Trunk	muscle
30	chr15:75430400-75431800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:75430400-75431800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr15:75430400-75433200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr15:75430600-75430800	Enhancers	Fetal Intestine Large	intestine
34	chr15:75430600-75431000	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr15:75430600-75431000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:75430600-75431000	Enhancers	Fetal Thymus	thymus
37	chr15:75430600-75431000	Enhancers	HSMMtube	muscle
38	chr15:75430600-75431000	Enhancers	Osteobl	bone
39	chr15:75430600-75431200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:75430600-75431200	Enhancers	NH-A	brain
41	chr15:75430600-75431400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:75430600-75431400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:75430600-75431400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:75430600-75431600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr15:75430600-75431600	Enhancers	HMEC	breast
46	chr15:75430600-75431800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:75430600-75432000	Enhancers	Spleen	Spleen
48	chr15:75430600-75433600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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