Variant report

Variant	rs7169867
Chromosome Location	chr15:75444773-75444774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75444598..75448715-chr15:75454020..75457057,3	MCF-7	breast:
2	chr15:75316439..75318954-chr15:75442453..75445329,2	K562	blood:
3	chr15:75440695..75447245-chr15:75492805..75496623,9	MCF-7	breast:
4	chr15:75444462..75447124-chr15:75451622..75453419,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1021382	0.96[ASN][1000 genomes]
rs10775208	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10851877	0.83[ASN][1000 genomes]
rs10851878	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072525	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11072526	0.99[ASN][1000 genomes]
rs11072528	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638746	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12102035	0.98[ASN][1000 genomes]
rs12442392	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442410	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12910348	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12914536	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917185	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917304	0.88[ASN][1000 genomes]
rs1602360	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1806793	0.97[ASN][1000 genomes]
rs1806794	0.97[ASN][1000 genomes]
rs2029519	0.96[ASN][1000 genomes]
rs2029520	0.96[ASN][1000 genomes]
rs2415158	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415159	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs28767543	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34511319	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4243032	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4288962	0.90[EUR][1000 genomes]
rs4334268	0.88[ASN][1000 genomes]
rs4421941	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4479194	0.97[ASN][1000 genomes]
rs4480765	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886420	0.83[ASN][1000 genomes]
rs4886422	0.97[ASN][1000 genomes]
rs4886658	0.91[ASN][1000 genomes]
rs4886661	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4886667	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886668	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886669	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55662404	0.99[ASN][1000 genomes]
rs58201389	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59390721	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495153	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495154	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495155	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495158	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7162055	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7162376	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7163083	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7166695	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7168020	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7169545	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7172205	0.98[ASN][1000 genomes]
rs7172677	0.98[ASN][1000 genomes]
rs7177528	0.91[ASN][1000 genomes]
rs7178005	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178625	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178784	0.98[ASN][1000 genomes]
rs7179426	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7181933	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72730601	0.98[ASN][1000 genomes]
rs8025412	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8026273	0.90[ASN][1000 genomes]
rs8027552	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8027604	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8028146	0.92[ASN][1000 genomes]
rs8029756	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8029760	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032208	0.96[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs8033754	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8035588	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8035789	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
8	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75438400-75445400	Weak transcription	Adipose Nuclei	Adipose
2	chr15:75438600-75448600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:75442000-75445400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:75442000-75445800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:75442200-75446000	Enhancers	K562	blood
6	chr15:75442400-75445600	Enhancers	GM12878-XiMat	blood
7	chr15:75442800-75445000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr15:75442800-75445400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr15:75443000-75445600	Weak transcription	A549	lung
10	chr15:75443000-75445800	Enhancers	Hela-S3	cervix
11	chr15:75443200-75444800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:75443600-75445200	Enhancers	HSMMtube	muscle
13	chr15:75443600-75447200	Enhancers	Placenta	Placenta
14	chr15:75443600-75448000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:75443600-75448400	Enhancers	Primary hematopoietic stem cells	blood
16	chr15:75443800-75445200	Enhancers	Fetal Heart	heart
17	chr15:75443800-75445800	Enhancers	Fetal Muscle Leg	muscle
18	chr15:75443800-75447200	Enhancers	Fetal Muscle Trunk	muscle
19	chr15:75443800-75449400	Enhancers	Spleen	Spleen
20	chr15:75444000-75445400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:75444000-75445600	Weak transcription	HMEC	breast
22	chr15:75444000-75445600	Weak transcription	NHDF-Ad	bronchial
23	chr15:75444000-75449000	Weak transcription	Lung	lung
24	chr15:75444200-75447800	Enhancers	HepG2	liver
25	chr15:75444400-75445000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:75444400-75445200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr15:75444400-75445400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr15:75444400-75446400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr15:75444600-75445000	Enhancers	Ovary	ovary
30	chr15:75444600-75447800	Enhancers	Primary B cells from cord blood	blood
31	chr15:75444600-75448800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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