Variant report

Variant	rs8035588
Chromosome Location	chr15:75436843-75436844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1021382	0.87[ASN][1000 genomes]
rs10775208	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10851878	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11072525	0.89[ASN][1000 genomes]
rs11072526	0.90[ASN][1000 genomes]
rs11072528	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11638746	0.80[ASN][1000 genomes]
rs12102035	0.89[ASN][1000 genomes]
rs12442392	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12442410	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12910348	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12914536	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12917185	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12917304	0.80[ASN][1000 genomes]
rs1602360	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1806793	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1806794	0.88[ASN][1000 genomes]
rs2029519	0.87[ASN][1000 genomes]
rs2029520	0.87[ASN][1000 genomes]
rs2415158	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2415159	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28767543	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs34511319	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4243032	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4288962	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4334268	0.80[ASN][1000 genomes]
rs4421941	0.80[ASN][1000 genomes]
rs4479194	0.88[ASN][1000 genomes]
rs4480765	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4886422	0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4886658	0.83[ASN][1000 genomes]
rs4886661	0.87[ASN][1000 genomes]
rs4886667	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4886668	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4886669	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55662404	0.90[ASN][1000 genomes]
rs58201389	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59390721	0.80[ASN][1000 genomes]
rs6495153	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6495154	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6495155	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6495158	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7162055	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7162376	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7163083	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7166695	0.80[ASN][1000 genomes]
rs7168020	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7169545	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7169867	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7172205	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7172677	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7177528	0.83[ASN][1000 genomes]
rs7178005	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7178625	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7178784	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7179426	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7179436	0.82[AFR][1000 genomes]
rs7181933	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72730601	0.89[ASN][1000 genomes]
rs8025412	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8026273	0.82[ASN][1000 genomes]
rs8027552	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8027604	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8028146	0.84[ASN][1000 genomes]
rs8029756	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8029760	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8032208	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8033754	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8035789	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
7	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
8	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75434600-75437600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
2	chr15:75434800-75437000	ZNF genes & repeats	Brain Hippocampus Middle	brain
3	chr15:75434800-75437600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
4	chr15:75434800-75438000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
5	chr15:75434800-75438400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:75434800-75438400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:75434800-75438400	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr15:75435000-75438800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
9	chr15:75435600-75443800	Weak transcription	Fetal Heart	heart
10	chr15:75436000-75437200	ZNF genes & repeats	Stomach Mucosa	stomach
11	chr15:75436000-75437600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:75436200-75438400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:75436200-75438600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:75436400-75437200	ZNF genes & repeats	Brain Substantia Nigra	brain
15	chr15:75436400-75437200	Enhancers	HepG2	liver
16	chr15:75436400-75437800	ZNF genes & repeats	Dnd41	blood
17	chr15:75436400-75438200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr15:75436600-75438000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:75436800-75438400	Flanking Active TSS	Hela-S3	cervix

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