Variant report

Variant	rs1806843
Chromosome Location	chr15:50682011-50682012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:50681045..50683024-chr15:50688227..50690082,2	MCF-7	breast:
2	chr15:50646317..50649319-chr15:50681822..50686701,6	MCF-7	breast:
3	chr15:50646276..50650534-chr15:50680183..50686065,7	MCF-7	breast:
4	chr15:50643783..50647096-chr15:50681349..50683673,3	K562	blood:
5	chr15:50653724..50655315-chr15:50681569..50683481,2	K562	blood:
6	chr15:50677655..50679701-chr15:50681289..50683239,2	MCF-7	breast:
7	chr15:50647718..50649902-chr15:50680619..50683517,3	K562	blood:
8	chr15:50652761..50655517-chr15:50682002..50683698,2	MCF-7	breast:
9	chr15:50677614..50679123-chr15:50679708..50682043,2	MCF-7	breast:
10	chr15:50655847..50659285-chr15:50680641..50684000,3	MCF-7	breast:
11	chr15:50480644..50482512-chr15:50681372..50682992,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000244879	Chromatin interaction
ENSG00000104064	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1056682	0.86[ASN][1000 genomes]
rs11857228	0.90[EUR][1000 genomes]
rs11857620	0.91[EUR][1000 genomes]
rs12902376	0.90[EUR][1000 genomes]
rs12907250	0.81[EUR][1000 genomes]
rs12911017	0.84[ASN][1000 genomes]
rs17431095	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs17431150	0.86[ASN][1000 genomes]
rs17431171	0.86[ASN][1000 genomes]
rs2555486	0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs28367473	0.90[EUR][1000 genomes]
rs28489579	0.89[ASN][1000 genomes]
rs28817272	0.92[ASN][1000 genomes]
rs28820353	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34174311	0.91[ASN][1000 genomes]
rs35541701	0.88[ASN][1000 genomes]
rs35628775	0.91[ASN][1000 genomes]
rs4461018	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs4775880	0.91[ASN][1000 genomes]
rs55941574	0.85[ASN][1000 genomes]
rs55948407	0.88[ASN][1000 genomes]
rs606118	0.90[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7164431	0.85[EUR][1000 genomes]
rs7167471	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs7178670	0.90[EUR][1000 genomes]
rs7182201	0.86[ASN][1000 genomes]
rs720599	0.85[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs9673053	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
4	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
5	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50671600-50682800	Weak transcription	GM12878-XiMat	blood
2	chr15:50677000-50690400	Weak transcription	Right Atrium	heart
3	chr15:50681400-50685600	Enhancers	Placenta	Placenta
4	chr15:50681600-50682800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:50681800-50684800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:50682000-50683000	Enhancers	Monocytes-CD14+_RO01746	blood

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