Variant report

Variant	rs12902376
Chromosome Location	chr15:50684203-50684204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50646317..50649319-chr15:50681822..50686701,6	MCF-7	breast:
2	chr15:50646276..50650534-chr15:50680183..50686065,7	MCF-7	breast:
3	chr15:50682997..50684534-chr15:50714644..50717235,2	K562	blood:

Variant related genes	Relation type
ENSG00000104064	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000138592	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11631966	0.87[AMR][1000 genomes]
rs11634585	0.83[ASN][1000 genomes]
rs11639115	0.84[AMR][1000 genomes]
rs11857228	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11857620	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12595107	0.84[AMR][1000 genomes]
rs12905221	0.83[ASN][1000 genomes]
rs12907250	0.86[EUR][1000 genomes]
rs12916674	0.83[AMR][1000 genomes]
rs1806843	0.90[EUR][1000 genomes]
rs2414047	0.85[AMR][1000 genomes]
rs28367473	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28820353	0.95[EUR][1000 genomes]
rs34565064	0.83[ASN][1000 genomes]
rs34943451	0.81[AMR][1000 genomes]
rs35831049	0.83[ASN][1000 genomes]
rs4461018	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4775878	0.84[AMR][1000 genomes]
rs66904653	0.83[ASN][1000 genomes]
rs7163201	0.83[AMR][1000 genomes]
rs7164431	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7164848	0.83[ASN][1000 genomes]
rs7167471	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7178670	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7496811	0.85[AMR][1000 genomes]
rs8027243	0.84[AMR][1000 genomes]
rs8035590	0.84[AMR][1000 genomes]
rs8036041	0.81[AMR][1000 genomes]
rs9673053	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
4	nsv948579	chr15:50645530-51045564	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
5	nsv524613	chr15:50656449-50868779	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50677000-50690400	Weak transcription	Right Atrium	heart
2	chr15:50681400-50685600	Enhancers	Placenta	Placenta
3	chr15:50681800-50684800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:50682200-50684400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:50682800-50685400	Enhancers	Hela-S3	cervix
6	chr15:50682800-50685600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:50683000-50685200	Enhancers	Fetal Muscle Leg	muscle
8	chr15:50683400-50684400	Enhancers	GM12878-XiMat	blood
9	chr15:50683800-50684400	Enhancers	Fetal Muscle Trunk	muscle
10	chr15:50683800-50703800	Weak transcription	K562	blood
11	chr15:50684000-50684600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:50684200-50684600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:50684200-50684600	Flanking Active TSS	NHDF-Ad	bronchial
14	chr15:50684200-50685400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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