Variant report
| Variant | rs180806796 |
|---|---|
| Chromosome Location | chr15:60060490-60060491 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:24)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:24 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | HEY1 | chr15:60060473-60061094 | K562 | blood: | n/a | n/a |
| 2 | POLR2A | chr15:60060409-60061031 | Hela-S3 | cervix: | n/a | n/a |
| 3 | TAF1 | chr15:60060468-60060787 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | POLR2A | chr15:60060484-60060729 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | TAF1 | chr15:60060478-60061033 | GM12891 | blood: | n/a | n/a |
| 6 | POLR2A | chr15:60060483-60060926 | GM12878 | blood: | n/a | n/a |
| 7 | ZBTB33 | chr15:60060443-60060774 | HepG2 | liver: | n/a | n/a |
| 8 | POLR2A | chr15:60060449-60061294 | GM12878 | blood: | n/a | n/a |
| 9 | POLR2A | chr15:60060445-60060728 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 10 | TAF1 | chr15:60060488-60060728 | GM12878 | blood: | n/a | n/a |
| 11 | SPI1 | chr15:60060486-60060659 | GM12878 | blood: | n/a | n/a |
| 12 | ZBTB33 | chr15:60060478-60060708 | K562 | blood: | n/a | n/a |
| 13 | HEY1 | chr15:60060467-60061150 | HepG2 | liver: | n/a | n/a |
| 14 | TCF12 | chr15:60060481-60060638 | GM12878 | blood: | n/a | n/a |
| 15 | HEY1 | chr15:60060438-60060626 | HepG2 | liver: | n/a | n/a |
| 16 | HEY1 | chr15:60060486-60060747 | K562 | blood: | n/a | n/a |
| 17 | POLR2A | chr15:60060487-60060677 | Hela-S3 | cervix: | n/a | n/a |
| 18 | POU2F2 | chr15:60060432-60061007 | GM12878 | blood: | n/a | n/a |
| 19 | TAF1 | chr15:60060481-60060660 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 20 | POLR2A | chr15:60060458-60060816 | GM12891 | blood: | n/a | n/a |
| 21 | POLR2A | chr15:60060479-60060700 | GM12891 | blood: | n/a | n/a |
| 22 | ZBTB33 | chr15:60060463-60061388 | K562 | blood: | n/a | n/a |
| 23 | POLR2A | chr15:60060407-60061323 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 24 | TAF1 | chr15:60060434-60060658 | Hela-S3 | cervix: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPS3AP6 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv977722 | chr15:60059391-60063331 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
