Variant report
Variant | nsv977722 |
---|---|
Chromosome Location | chr15:60059391-60063331 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:45)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:45 , 50 per page) page:
1
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | FOSL2 | chr15:60060728-60061298 | HepG2 | liver: | n/a | n/a |
2 | FOXA1 | chr15:60060995-60061311 | HepG2 | liver: | n/a | n/a |
3 | GATA2 | chr15:60060755-60061376 | K562 | blood: | n/a | n/a |
4 | HEY1 | chr15:60060438-60060626 | HepG2 | liver: | n/a | n/a |
5 | HEY1 | chr15:60060486-60060747 | K562 | blood: | n/a | n/a |
6 | HEY1 | chr15:60060467-60061150 | HepG2 | liver: | n/a | n/a |
7 | HEY1 | chr15:60061101-60061330 | K562 | blood: | n/a | n/a |
8 | HEY1 | chr15:60060473-60061094 | K562 | blood: | n/a | n/a |
9 | IRF4 | chr15:60060776-60061116 | GM12878 | blood: | n/a | n/a |
10 | POLR2A | chr15:60060479-60060700 | GM12891 | blood: | n/a | n/a |
11 | POLR2A | chr15:60060409-60061031 | Hela-S3 | cervix: | n/a | n/a |
12 | POLR2A | chr15:60060789-60061084 | H1-hESC | embryonic stem cell: | n/a | n/a |
13 | POLR2A | chr15:60060483-60060926 | GM12878 | blood: | n/a | n/a |
14 | POLR2A | chr15:60060487-60060677 | Hela-S3 | cervix: | n/a | n/a |
15 | POLR2A | chr15:60060449-60061294 | GM12878 | blood: | n/a | n/a |
16 | POLR2A | chr15:60060497-60060679 | GM12878 | blood: | n/a | n/a |
17 | POLR2A | chr15:60060495-60060716 | GM12891 | blood: | n/a | n/a |
18 | POLR2A | chr15:60060484-60060729 | H1-hESC | embryonic stem cell: | n/a | n/a |
19 | POLR2A | chr15:60060499-60060645 | A549 | lung: | n/a | n/a |
20 | POLR2A | chr15:60060501-60060677 | H1-hESC | embryonic stem cell: | n/a | n/a |
21 | POLR2A | chr15:60061217-60061339 | HepG2 | liver: | n/a | n/a |
22 | POLR2A | chr15:60060532-60060603 | A549 | lung: | n/a | n/a |
23 | POLR2A | chr15:60060499-60060610 | A549 | lung: | n/a | n/a |
24 | POLR2A | chr15:60060445-60060728 | H1-hESC | embryonic stem cell: | n/a | n/a |
25 | POLR2A | chr15:60060996-60061364 | GM12878 | blood: | n/a | n/a |
26 | POLR2A | chr15:60060458-60060816 | GM12891 | blood: | n/a | n/a |
27 | POLR2A | chr15:60060525-60060611 | HepG2 | liver: | n/a | n/a |
28 | POLR2A | chr15:60060495-60060735 | A549 | lung: | n/a | n/a |
29 | POLR2A | chr15:60060407-60061323 | H1-hESC | embryonic stem cell: | n/a | n/a |
30 | POU2F2 | chr15:60060432-60061007 | GM12878 | blood: | n/a | n/a |
31 | SP1 | chr15:60061011-60061281 | HepG2 | liver: | n/a | n/a |
32 | SPI1 | chr15:60060486-60060659 | GM12878 | blood: | n/a | n/a |
33 | TAF1 | chr15:60060481-60060660 | H1-hESC | embryonic stem cell: | n/a | n/a |
34 | TAF1 | chr15:60060468-60060787 | H1-hESC | embryonic stem cell: | n/a | n/a |
35 | TAF1 | chr15:60060499-60060720 | GM12892 | blood: | n/a | n/a |
36 | TAF1 | chr15:60060497-60060658 | Hela-S3 | cervix: | n/a | n/a |
37 | TAF1 | chr15:60060434-60060658 | Hela-S3 | cervix: | n/a | n/a |
38 | TAF1 | chr15:60060498-60060670 | GM12891 | blood: | n/a | n/a |
39 | TAF1 | chr15:60060488-60060728 | GM12878 | blood: | n/a | n/a |
40 | TAF1 | chr15:60060478-60061033 | GM12891 | blood: | n/a | n/a |
41 | TCF12 | chr15:60060822-60061034 | GM12878 | blood: | n/a | n/a |
42 | TCF12 | chr15:60060481-60060638 | GM12878 | blood: | n/a | n/a |
43 | ZBTB33 | chr15:60060443-60060774 | HepG2 | liver: | n/a | n/a |
44 | ZBTB33 | chr15:60060478-60060708 | K562 | blood: | n/a | n/a |
45 | ZBTB33 | chr15:60060463-60061388 | K562 | blood: | n/a | n/a |
No data |
No data |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
RPS3AP6 | TF binding region |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs528019174 | chr15:60060418-60060419 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs552801291 | chr15:60060445-60060446 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
3 | rs540243387 | chr15:60060453-60060454 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
4 | rs7163623 | chr15:60060482-60060483 | Inactive region | TF binding region | 1 gene(s) | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
5 | rs180806796 | chr15:60060490-60060491 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
6 | rs377751440 | chr15:60060523-60060524 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
7 | rs557060848 | chr15:60060541-60060542 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
8 | rs16941743 | chr15:60060545-60060546 | Inactive region | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Ewing''s sarcoma | 21437220 | CNVD |
Schizophrenia | 19415332 | CNVD |
Breast cancer | 22522925 | CNVD |
Autism | 22495311 | CNVD |
Wilms tumour | 21544195 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
cataract | 16735990 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Medulloblastoma | 21979893 | CNVD |
spastic paraplegia with thinning of corpus callosum | 19105190 | CNVD |
Schizophrenia | 21324950 | CNVD |
Astrocytoma | 17387387 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Disease | 21824424 | CNVD |
Melanoma | 18172304 | CNVD |
Gastric cancer | 17167181 | CNVD |
Neuroblastoma | 19435921 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Multiple myeloma | 17077331 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Intellectual disability | 22102821 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Prostate cancer | 16573809 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Multiple myeloma | 20724749 | CNVD |
Lung cancer | 18438408 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Prostate cancer | 18632612 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Cancer | 21129771 | CNVD |
Breast cancer | 16272173 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Abnormal phenotypes | 18644119 | CNVD |
Cancer | 16751803 | CNVD |
Esophageal adenocarcinoma | 18820669 | CNVD |
Gastrointestinal stromal cancer | 20818650 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Breast cancer | 17133270 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Congenital diaphragmatic hernia | 21341218 | CNVD |
Holoprosencephaly | 21359414 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Adenocarcinoma | 19607727 | CNVD |
Squamous cell cancer | 19607727 | CNVD |
Acute promyelocytic leukemia | 19109227 | CNVD |
Mental retardation | 17124404 | CNVD |
Gastrointestinal stromal cancer | 20877625 | CNVD |
Pancreatic cancer | 17952125 | CNVD |