Variant report
| Variant | rs557060848 |
|---|---|
| Chromosome Location | chr15:60060541-60060542 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:35)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:35 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | HEY1 | chr15:60060473-60061094 | K562 | blood: | n/a | n/a |
| 2 | POLR2A | chr15:60060409-60061031 | Hela-S3 | cervix: | n/a | n/a |
| 3 | POLR2A | chr15:60060499-60060610 | A549 | lung: | n/a | n/a |
| 4 | TAF1 | chr15:60060468-60060787 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | POLR2A | chr15:60060499-60060645 | A549 | lung: | n/a | n/a |
| 6 | TAF1 | chr15:60060499-60060720 | GM12892 | blood: | n/a | n/a |
| 7 | POLR2A | chr15:60060484-60060729 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 8 | TAF1 | chr15:60060478-60061033 | GM12891 | blood: | n/a | n/a |
| 9 | POLR2A | chr15:60060483-60060926 | GM12878 | blood: | n/a | n/a |
| 10 | ZBTB33 | chr15:60060443-60060774 | HepG2 | liver: | n/a | n/a |
| 11 | POLR2A | chr15:60060532-60060603 | A549 | lung: | n/a | n/a |
| 12 | POLR2A | chr15:60060449-60061294 | GM12878 | blood: | n/a | n/a |
| 13 | POLR2A | chr15:60060445-60060728 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 14 | TAF1 | chr15:60060488-60060728 | GM12878 | blood: | n/a | n/a |
| 15 | SPI1 | chr15:60060486-60060659 | GM12878 | blood: | n/a | n/a |
| 16 | ZBTB33 | chr15:60060478-60060708 | K562 | blood: | n/a | n/a |
| 17 | HEY1 | chr15:60060467-60061150 | HepG2 | liver: | n/a | n/a |
| 18 | TAF1 | chr15:60060498-60060670 | GM12891 | blood: | n/a | n/a |
| 19 | TCF12 | chr15:60060481-60060638 | GM12878 | blood: | n/a | n/a |
| 20 | HEY1 | chr15:60060438-60060626 | HepG2 | liver: | n/a | n/a |
| 21 | HEY1 | chr15:60060486-60060747 | K562 | blood: | n/a | n/a |
| 22 | POLR2A | chr15:60060487-60060677 | Hela-S3 | cervix: | n/a | n/a |
| 23 | POLR2A | chr15:60060501-60060677 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 24 | POU2F2 | chr15:60060432-60061007 | GM12878 | blood: | n/a | n/a |
| 25 | TAF1 | chr15:60060481-60060660 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 26 | POLR2A | chr15:60060458-60060816 | GM12891 | blood: | n/a | n/a |
| 27 | POLR2A | chr15:60060479-60060700 | GM12891 | blood: | n/a | n/a |
| 28 | POLR2A | chr15:60060495-60060716 | GM12891 | blood: | n/a | n/a |
| 29 | POLR2A | chr15:60060525-60060611 | HepG2 | liver: | n/a | n/a |
| 30 | TAF1 | chr15:60060497-60060658 | Hela-S3 | cervix: | n/a | n/a |
| 31 | ZBTB33 | chr15:60060463-60061388 | K562 | blood: | n/a | n/a |
| 32 | POLR2A | chr15:60060407-60061323 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 33 | POLR2A | chr15:60060495-60060735 | A549 | lung: | n/a | n/a |
| 34 | TAF1 | chr15:60060434-60060658 | Hela-S3 | cervix: | n/a | n/a |
| 35 | POLR2A | chr15:60060497-60060679 | GM12878 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPS3AP6 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904280 | chr15:60042722-60524025 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv977722 | chr15:60059391-60063331 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
