Variant report

Variant	rs1810338
Chromosome Location	chr2:172642881-172642882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172636565..172640348-chr2:172640968..172644401,3	MCF-7	breast:
2	chr2:172642743..172644911-chr2:172668781..172670774,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13012103	0.80[AMR][1000 genomes]
rs1400816	0.82[AMR][1000 genomes]
rs1607253	0.80[AMR][1000 genomes]
rs2292813	0.86[AMR][1000 genomes]
rs3770457	0.84[AMR][1000 genomes]
rs3821094	0.82[AMR][1000 genomes]
rs3821096	0.84[AMR][1000 genomes]
rs4507064	0.86[AMR][1000 genomes]
rs6433313	0.84[AMR][1000 genomes]
rs6433315	0.82[AMR][1000 genomes]
rs949548	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834457	chr2:172564939-172770901	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172593200-172645000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:172603000-172688400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:172610200-172651400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:172621000-172648000	Weak transcription	HSMMtube	muscle
5	chr2:172633400-172646200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:172635400-172647600	Weak transcription	NHDF-Ad	bronchial
7	chr2:172635400-172654800	Weak transcription	A549	lung
8	chr2:172635600-172643000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:172635600-172654600	Weak transcription	Liver	Liver
10	chr2:172636800-172654800	Weak transcription	Small Intestine	intestine
11	chr2:172638000-172650200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:172638200-172645000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:172638600-172644600	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr2:172638600-172645600	Strong transcription	Primary B cells from cord blood	blood
15	chr2:172638600-172648400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:172638600-172650600	Strong transcription	Stomach Smooth Muscle	stomach
17	chr2:172638800-172644800	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr2:172638800-172645400	Strong transcription	Adipose Nuclei	Adipose
19	chr2:172638800-172648400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:172638800-172650400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr2:172638800-172650800	Strong transcription	Primary T cells from cord blood	blood
22	chr2:172638800-172650800	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr2:172638800-172651000	Strong transcription	Dnd41	blood
24	chr2:172639000-172644400	Strong transcription	Fetal Brain Female	brain
25	chr2:172639200-172648400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr2:172639200-172650200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr2:172639200-172650800	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr2:172639400-172643800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr2:172639600-172645600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr2:172639600-172648400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:172639800-172650200	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr2:172639800-172650600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr2:172640000-172644400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr2:172640000-172644400	Strong transcription	Brain Substantia Nigra	brain
35	chr2:172640000-172644400	Strong transcription	Esophagus	oesophagus
36	chr2:172640000-172644400	Strong transcription	Osteobl	bone
37	chr2:172640000-172644600	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr2:172640000-172645000	Strong transcription	Fetal Muscle Leg	muscle
39	chr2:172640000-172645200	Strong transcription	Ovary	ovary
40	chr2:172640000-172645400	Strong transcription	Brain Germinal Matrix	brain
41	chr2:172640000-172646600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:172640000-172648400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:172640000-172648400	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr2:172640000-172650400	Strong transcription	Fetal Muscle Trunk	muscle
45	chr2:172640000-172650400	Strong transcription	Fetal Thymus	thymus
46	chr2:172640000-172651400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr2:172640200-172643200	Weak transcription	Hela-S3	cervix
48	chr2:172640200-172644200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr2:172640200-172644400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:172640200-172644400	Strong transcription	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links