Variant report

Variant rs949548
Chromosome Location chr2:172654609-172654610
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:172603000-172688400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr2:172635400-172654800 Weak transcription A549 lung
3 chr2:172636800-172654800 Weak transcription Small Intestine intestine
4 chr2:172640200-172662800 Weak transcription Fetal Brain Male brain
5 chr2:172640400-172668000 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr2:172641600-172666400 Weak transcription Fetal Kidney kidney
7 chr2:172642200-172654800 Weak transcription HSMM muscle
8 chr2:172642200-172663600 Weak transcription K562 blood
9 chr2:172642200-172665800 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr2:172642400-172688400 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr2:172643600-172687800 Weak transcription Hela-S3 cervix
12 chr2:172643800-172674600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr2:172644000-172667000 Weak transcription Rectal Smooth Muscle rectum
14 chr2:172644200-172666600 Weak transcription Placenta Placenta
15 chr2:172644400-172654800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
16 chr2:172644400-172655000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr2:172644400-172655000 Weak transcription Primary neutrophils fromperipheralblood blood
18 chr2:172644400-172656000 Weak transcription Aorta Aorta
19 chr2:172644400-172666000 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr2:172644400-172681800 Weak transcription Brain Substantia Nigra brain
21 chr2:172644400-172684400 Weak transcription Spleen Spleen
22 chr2:172644600-172654800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr2:172644600-172654800 Weak transcription NHLF lung
24 chr2:172644600-172681800 Weak transcription Brain Angular Gyrus brain
25 chr2:172645000-172654800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr2:172645400-172687200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr2:172648200-172654800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
28 chr2:172648200-172666000 Weak transcription Fetal Brain Female brain
29 chr2:172648200-172684400 Weak transcription Brain Cingulate Gyrus brain
30 chr2:172648200-172687400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr2:172648200-172687400 Weak transcription Colonic Mucosa Colon
32 chr2:172648400-172654800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
33 chr2:172648400-172655200 Weak transcription Fetal Lung lung
34 chr2:172648400-172671000 Weak transcription Psoas Muscle Psoas
35 chr2:172648400-172671200 Weak transcription Right Ventricle heart
36 chr2:172648400-172681800 Weak transcription Brain Inferior Temporal Lobe brain
37 chr2:172648400-172687600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
38 chr2:172648600-172654800 Weak transcription HSMMtube muscle
39 chr2:172648800-172687400 Weak transcription Esophagus oesophagus
40 chr2:172649000-172687400 Weak transcription Gastric stomach
41 chr2:172649200-172682000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
42 chr2:172650200-172654800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr2:172650200-172656000 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr2:172650200-172662400 Weak transcription Ovary ovary
45 chr2:172650400-172654800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr2:172650400-172654800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr2:172650400-172654800 Weak transcription HMEC breast
48 chr2:172650400-172655400 Weak transcription Rectal Mucosa Donor 31 rectum
49 chr2:172650400-172656000 Weak transcription Primary B cells from peripheral blood blood
50 chr2:172650400-172661000 Weak transcription Fetal Stomach stomach

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