Variant report

Variant	rs3821095
Chromosome Location	chr2:172684006-172684007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172679219..172682051-chr2:172683706..172687568,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs1010533	0.83[AFR][1000 genomes]
rs10185633	0.86[YRI][hapmap]
rs10196521	0.83[YRI][hapmap]
rs1022358	0.83[YRI][hapmap]
rs11678892	0.83[YRI][hapmap]
rs11678984	0.87[YRI][hapmap]
rs11887208	0.84[YRI][hapmap]
rs12617265	0.83[YRI][hapmap]
rs12619137	0.83[YRI][hapmap]
rs12692976	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13017988	0.83[YRI][hapmap]
rs1400816	0.84[YRI][hapmap]
rs1543168	0.84[YRI][hapmap]
rs16859721	0.83[YRI][hapmap]
rs1878583	0.83[YRI][hapmap]
rs2037164	0.84[YRI][hapmap]
rs2056202	0.83[YRI][hapmap]
rs2176466	0.84[YRI][hapmap]
rs2292814	0.83[YRI][hapmap]
rs2357064	0.84[YRI][hapmap]
rs2357206	0.82[YRI][hapmap]
rs312917	0.83[YRI][hapmap]
rs312918	0.86[YRI][hapmap]
rs3770457	0.84[YRI][hapmap]
rs3821094	0.83[YRI][hapmap]
rs3821096	0.83[YRI][hapmap]
rs4668417	0.83[YRI][hapmap]
rs6433313	0.83[YRI][hapmap]
rs6433315	0.83[YRI][hapmap]
rs6433317	0.83[YRI][hapmap]
rs6710698	0.87[YRI][hapmap]
rs6711813	0.83[YRI][hapmap]
rs6721680	0.86[YRI][hapmap]
rs6736159	0.83[YRI][hapmap]
rs6757773	0.84[YRI][hapmap]
rs6760680	0.81[YRI][hapmap]
rs7580232	0.83[YRI][hapmap]
rs7597387	0.89[YRI][hapmap]
rs7608403	0.86[YRI][hapmap]
rs925881	0.83[YRI][hapmap]
rs9287948	0.84[YRI][hapmap]
rs949548	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834457	chr2:172564939-172770901	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv583611	chr2:172683481-172750257	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172603000-172688400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:172642400-172688400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr2:172643600-172687800	Weak transcription	Hela-S3	cervix
4	chr2:172644400-172684400	Weak transcription	Spleen	Spleen
5	chr2:172645400-172687200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:172648200-172684400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:172648200-172687400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:172648200-172687400	Weak transcription	Colonic Mucosa	Colon
9	chr2:172648400-172687600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr2:172648800-172687400	Weak transcription	Esophagus	oesophagus
11	chr2:172649000-172687400	Weak transcription	Gastric	stomach
12	chr2:172650400-172687400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr2:172650400-172687600	Weak transcription	Lung	lung
14	chr2:172653000-172687400	Weak transcription	Fetal Heart	heart
15	chr2:172655400-172687400	Weak transcription	A549	lung
16	chr2:172655600-172687400	Weak transcription	NH-A	brain
17	chr2:172655800-172687400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:172656400-172684200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr2:172656400-172684400	Weak transcription	Aorta	Aorta
20	chr2:172657600-172687400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr2:172663600-172687400	Weak transcription	Fetal Brain Male	brain
22	chr2:172664200-172687400	Weak transcription	K562	blood
23	chr2:172664400-172687400	Weak transcription	HUVEC	blood vessel
24	chr2:172664600-172684400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:172664600-172687400	Weak transcription	NHEK	skin
26	chr2:172664800-172686400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:172664800-172687600	Weak transcription	HMEC	breast
28	chr2:172665200-172689600	Weak transcription	Small Intestine	intestine
29	chr2:172666200-172689600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr2:172666600-172685000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr2:172667000-172687400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr2:172667600-172686800	Weak transcription	Colon Smooth Muscle	Colon
33	chr2:172667800-172684400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr2:172667800-172685200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr2:172667800-172685400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr2:172667800-172687200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr2:172667800-172687400	Weak transcription	NHLF	lung
38	chr2:172668200-172687400	Weak transcription	Fetal Kidney	kidney
39	chr2:172670200-172684600	Weak transcription	Primary B cells from peripheral blood	blood
40	chr2:172670200-172687400	Weak transcription	HSMMtube	muscle
41	chr2:172671800-172684600	Weak transcription	Ovary	ovary
42	chr2:172671800-172684600	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr2:172671800-172685400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr2:172671800-172686200	Weak transcription	Right Ventricle	heart
45	chr2:172675400-172686200	Weak transcription	HSMM	muscle
46	chr2:172675400-172688400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr2:172676800-172685200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr2:172679400-172687400	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr2:172680400-172685400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr2:172680800-172687200	Weak transcription	Osteobl	bone

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