Variant report

Variant	rs59414074
Chromosome Location	chr2:172535198-172535199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:11967533..11969732-chr2:172535151..172536653,2	MCF-7	breast:
2	chr2:172534391..172539104-chr2:172541690..172546156,5	K562	blood:
3	chr2:172526794..172530696-chr2:172532860..172536577,3	K562	blood:

Variant related genes	Relation type
ENSG00000199347	Chromatin interaction
ENSG00000077380	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10184770	0.95[AFR][1000 genomes]
rs10185633	0.98[AFR][1000 genomes]
rs10201520	0.96[AFR][1000 genomes]
rs1022358	0.80[AFR][1000 genomes]
rs10930493	0.96[AFR][1000 genomes]
rs11678892	0.89[AFR][1000 genomes]
rs11887208	0.91[AFR][1000 genomes]
rs11903123	0.82[AFR][1000 genomes]
rs12464262	0.84[ASN][1000 genomes]
rs12471160	0.84[ASN][1000 genomes]
rs12617265	0.86[ASN][1000 genomes]
rs12619137	0.89[ASN][1000 genomes]
rs12692971	0.88[AFR][1000 genomes]
rs12692977	0.89[ASN][1000 genomes]
rs12692979	0.83[ASN][1000 genomes]
rs13012103	0.92[AFR][1000 genomes]
rs13021571	0.93[ASN][1000 genomes]
rs1400816	0.82[AFR][1000 genomes]
rs1515812	0.98[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1517678	0.94[AFR][1000 genomes]
rs1543168	0.94[AFR][1000 genomes]
rs1554165	0.97[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1607253	0.93[AFR][1000 genomes]
rs16859721	0.99[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17580984	0.84[ASN][1000 genomes]
rs17614989	0.84[ASN][1000 genomes]
rs17615013	0.84[ASN][1000 genomes]
rs1850031	0.98[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2037164	0.98[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2056202	0.89[ASN][1000 genomes]
rs2138873	0.89[ASN][1000 genomes]
rs2176466	0.93[ASN][1000 genomes]
rs2292813	0.85[AFR][1000 genomes]
rs2292814	0.95[AFR][1000 genomes]
rs2357206	0.89[ASN][1000 genomes]
rs2884123	0.89[ASN][1000 genomes]
rs312915	0.85[AFR][1000 genomes]
rs312917	0.97[AFR][1000 genomes]
rs3770457	0.82[AFR][1000 genomes]
rs3821094	0.80[AFR][1000 genomes]
rs3821096	0.85[AFR][1000 genomes]
rs4507064	0.89[AFR][1000 genomes]
rs4668413	0.93[ASN][1000 genomes]
rs4668415	0.89[ASN][1000 genomes]
rs4668416	0.89[ASN][1000 genomes]
rs58565148	0.99[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs61588295	0.84[AFR][1000 genomes]
rs6433313	0.82[AFR][1000 genomes]
rs6433315	0.81[AFR][1000 genomes]
rs6433317	0.86[ASN][1000 genomes]
rs6708365	0.86[ASN][1000 genomes]
rs6709299	0.85[ASN][1000 genomes]
rs6711813	0.86[ASN][1000 genomes]
rs6726991	0.86[ASN][1000 genomes]
rs6727459	0.89[ASN][1000 genomes]
rs6736159	0.86[ASN][1000 genomes]
rs6760680	0.93[ASN][1000 genomes]
rs7574711	0.95[AFR][1000 genomes]
rs7580232	0.89[ASN][1000 genomes]
rs7588025	0.86[ASN][1000 genomes]
rs7588351	0.97[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs925881	0.89[ASN][1000 genomes]
rs9287948	0.95[AFR][1000 genomes]
rs949548	0.81[AFR][1000 genomes]
rs9636293	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs979956	0.83[AFR][1000 genomes]
rs979957	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997638	chr2:172442205-172560406	Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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