Variant report

Variant	rs61588295
Chromosome Location	chr2:172532728-172532729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:172531431..172533779-chr2:172542389..172544268,2	K562	blood:
2	chr2:172525954..172528530-chr2:172530857..172533373,2	MCF-7	breast:
3	chr2:172528585..172533406-chr2:172536831..172539990,4	K562	blood:

Variant related genes	Relation type
ENSG00000077380	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10184770	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10185633	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10201520	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1022358	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10930493	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11678892	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11887208	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12464262	0.81[ASN][1000 genomes]
rs12471160	0.81[ASN][1000 genomes]
rs12478189	0.81[ASN][1000 genomes]
rs12692971	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13012103	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1515812	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1517678	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1543168	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1554165	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1607253	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16859721	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17580984	0.81[ASN][1000 genomes]
rs17614989	0.81[ASN][1000 genomes]
rs17615013	0.81[ASN][1000 genomes]
rs1850031	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2037164	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2292814	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2357064	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs312917	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3770453	0.86[ASN][1000 genomes]
rs58565148	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59414074	0.84[AFR][1000 genomes]
rs7574711	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7588351	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9287948	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs970948	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997638	chr2:172442205-172560406	Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172532200-172532800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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