Variant report

Variant	rs1815235
Chromosome Location	chr14:32943268-32943269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10130375	0.84[ASN][1000 genomes]
rs12232175	0.85[ASN][1000 genomes]
rs1951198	0.90[EUR][1000 genomes]
rs1951199	0.88[ASN][1000 genomes]
rs1951200	0.85[ASN][1000 genomes]
rs1951201	0.85[ASN][1000 genomes]
rs1957031	0.90[EUR][1000 genomes]
rs1957032	0.88[ASN][1000 genomes]
rs1957033	0.88[ASN][1000 genomes]
rs1957034	0.85[ASN][1000 genomes]
rs1957035	0.85[ASN][1000 genomes]
rs1957036	0.85[ASN][1000 genomes]
rs1961349	0.88[ASN][1000 genomes]
rs2383333	0.82[ASN][1000 genomes]
rs4296166	0.85[ASN][1000 genomes]
rs4489913	0.85[ASN][1000 genomes]
rs4981156	0.85[ASN][1000 genomes]
rs4981973	0.85[ASN][1000 genomes]
rs7160547	0.81[ASN][1000 genomes]
rs745562	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8010095	0.85[ASN][1000 genomes]
rs8010225	0.85[ASN][1000 genomes]
rs8014556	0.88[ASN][1000 genomes]
rs941751	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv901595	chr14:32928634-32961434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32936400-32944800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:32936800-32944000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:32938000-32947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:32938200-32943600	Enhancers	Rectal Smooth Muscle	rectum
5	chr14:32939400-32944800	Enhancers	Brain Angular Gyrus	brain
6	chr14:32940400-32943600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:32940400-32943600	Enhancers	Fetal Muscle Leg	muscle
8	chr14:32940600-32944600	Enhancers	Colon Smooth Muscle	Colon
9	chr14:32940800-32943600	Enhancers	Fetal Intestine Large	intestine
10	chr14:32941000-32943400	Enhancers	Placenta	Placenta
11	chr14:32941200-32943400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:32941200-32943600	Enhancers	Liver	Liver
13	chr14:32941400-32943400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:32941400-32943600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:32941400-32943600	Enhancers	Fetal Muscle Trunk	muscle
16	chr14:32941800-32945000	Enhancers	Brain Cingulate Gyrus	brain
17	chr14:32942000-32943400	Enhancers	Brain Anterior Caudate	brain
18	chr14:32942000-32944600	Enhancers	HSMM	muscle
19	chr14:32942000-32946000	Weak transcription	Right Ventricle	heart
20	chr14:32942000-32946600	Weak transcription	Esophagus	oesophagus
21	chr14:32942000-32947200	Weak transcription	Right Atrium	heart
22	chr14:32942200-32944200	Flanking Active TSS	NHEK	skin
23	chr14:32942400-32943600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:32942400-32945200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr14:32942400-32946600	Weak transcription	Fetal Brain Female	brain
26	chr14:32942600-32943600	Enhancers	NHLF	lung
27	chr14:32942600-32945000	Enhancers	Brain Substantia Nigra	brain
28	chr14:32942800-32944800	Enhancers	HMEC	breast
29	chr14:32943000-32943400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:32943000-32943600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr14:32943000-32943800	Enhancers	Brain Hippocampus Middle	brain
32	chr14:32943000-32943800	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr14:32943000-32943800	Enhancers	A549	lung
34	chr14:32943000-32944000	Enhancers	HSMMtube	muscle
35	chr14:32943000-32944200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr14:32943000-32944200	Weak transcription	Fetal Lung	lung
37	chr14:32943000-32944400	Enhancers	Hela-S3	cervix
38	chr14:32943000-32945800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr14:32943000-32946000	Weak transcription	Left Ventricle	heart
40	chr14:32943000-32947000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr14:32943000-32947000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr14:32943200-32943600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:32943200-32944400	Enhancers	NHDF-Ad	bronchial
44	chr14:32943200-32945200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr14:32943200-32945800	Weak transcription	Fetal Heart	heart
46	chr14:32943200-32945800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr14:32943200-32946400	Weak transcription	Aorta	Aorta
48	chr14:32943200-32946400	Weak transcription	Fetal Brain Male	brain
49	chr14:32943200-32947200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr14:32943200-32947200	Weak transcription	Osteobl	bone

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