Variant report

Variant	rs1961349
Chromosome Location	chr14:32950596-32950597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32942791..32945014-chr14:32949857..32951632,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10130278	0.81[EUR][1000 genomes]
rs10130375	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10130385	0.84[EUR][1000 genomes]
rs10131325	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10131652	0.82[EUR][1000 genomes]
rs10143778	0.85[EUR][1000 genomes]
rs12147858	0.81[EUR][1000 genomes]
rs12232175	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1815235	0.88[ASN][1000 genomes]
rs1951197	0.95[EUR][1000 genomes]
rs1951198	0.80[EUR][1000 genomes]
rs1951199	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951200	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1951201	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957031	0.80[EUR][1000 genomes]
rs1957032	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957033	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957034	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957035	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1957036	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2383333	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4296166	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4332665	0.85[EUR][1000 genomes]
rs4353399	0.85[EUR][1000 genomes]
rs4427713	0.81[EUR][1000 genomes]
rs4433719	0.83[EUR][1000 genomes]
rs4465524	0.85[EUR][1000 genomes]
rs4489913	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4981155	0.85[EUR][1000 genomes]
rs4981156	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4981972	0.95[EUR][1000 genomes]
rs4981973	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4981974	0.84[EUR][1000 genomes]
rs7160547	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs745562	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7492909	0.85[EUR][1000 genomes]
rs8004777	0.84[EUR][1000 genomes]
rs8005075	0.88[EUR][1000 genomes]
rs8005890	0.91[EUR][1000 genomes]
rs8006554	0.88[EUR][1000 genomes]
rs8010095	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8010225	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8014556	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs941751	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv901595	chr14:32928634-32961434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1006050	chr14:32950054-32958354	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv974324	chr14:32950342-32961052	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32943200-32950800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:32946800-32951200	Weak transcription	Right Ventricle	heart
3	chr14:32947600-32950600	Weak transcription	Left Ventricle	heart
4	chr14:32947600-32951400	Weak transcription	Fetal Heart	heart
5	chr14:32947600-32962200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:32947800-32951000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:32947800-32960600	Weak transcription	Fetal Brain Male	brain
8	chr14:32947800-32963400	Weak transcription	Right Atrium	heart
9	chr14:32948000-32951400	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:32948200-32950600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:32948200-32951000	Weak transcription	Brain Angular Gyrus	brain
12	chr14:32948200-32951000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:32948200-32951000	Weak transcription	Brain Substantia Nigra	brain
14	chr14:32949400-32950800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:32949600-32951000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:32949600-32951200	Weak transcription	Aorta	Aorta
17	chr14:32949800-32950800	Weak transcription	Brain Anterior Caudate	brain
18	chr14:32950000-32950800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:32950000-32951400	Weak transcription	HSMMtube	muscle
20	chr14:32950400-32950800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:32950400-32951800	Enhancers	Brain Hippocampus Middle	brain

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