Variant report

Variant	rs1951197
Chromosome Location	chr14:32951171-32951172
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32942791..32945014-chr14:32949857..32951632,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10130278	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10130375	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10130385	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10131325	0.82[EUR][1000 genomes]
rs10131652	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10143760	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10143778	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12147858	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12232175	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1951198	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951199	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1951200	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1951201	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1957031	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1957032	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1957033	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1957034	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1957035	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1957036	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1961349	0.95[EUR][1000 genomes]
rs2383333	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3784196	0.89[ASN][1000 genomes]
rs4296166	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4332665	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4353399	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4427713	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4433719	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4465524	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4489913	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4981155	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4981156	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4981972	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4981973	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4981974	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7160547	0.83[EUR][1000 genomes]
rs7492909	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8004271	0.90[AMR][1000 genomes]
rs8004777	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8005075	0.84[EUR][1000 genomes]
rs8005890	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8006554	0.84[EUR][1000 genomes]
rs8010095	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8010225	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8014556	0.90[EUR][1000 genomes]
rs941750	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv901595	chr14:32928634-32961434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1006050	chr14:32950054-32958354	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv974324	chr14:32950342-32961052	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32946800-32951200	Weak transcription	Right Ventricle	heart
2	chr14:32947600-32951400	Weak transcription	Fetal Heart	heart
3	chr14:32947600-32962200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:32947800-32960600	Weak transcription	Fetal Brain Male	brain
5	chr14:32947800-32963400	Weak transcription	Right Atrium	heart
6	chr14:32948000-32951400	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:32949600-32951200	Weak transcription	Aorta	Aorta
8	chr14:32950000-32951400	Weak transcription	HSMMtube	muscle
9	chr14:32950400-32951800	Enhancers	Brain Hippocampus Middle	brain
10	chr14:32950600-32951400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:32950600-32951400	Enhancers	Left Ventricle	heart
12	chr14:32950800-32951600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:32950800-32951600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:32950800-32951600	Enhancers	Brain Anterior Caudate	brain
15	chr14:32950800-32951600	Enhancers	Brain Cingulate Gyrus	brain
16	chr14:32950800-32960600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:32951000-32951600	Enhancers	Brain Angular Gyrus	brain
18	chr14:32951000-32951600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr14:32951000-32951600	Enhancers	Brain Substantia Nigra	brain
20	chr14:32951000-32951600	Enhancers	Rectal Smooth Muscle	rectum
21	chr14:32951000-32952000	Enhancers	Cortex derived primary cultured neurospheres	brain

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