Variant report

Variant	rs3784196
Chromosome Location	chr14:32943000-32943001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10130278	0.85[ASN][1000 genomes]
rs10130385	0.84[ASN][1000 genomes]
rs10143778	0.84[ASN][1000 genomes]
rs1951197	0.89[ASN][1000 genomes]
rs1951198	0.89[ASN][1000 genomes]
rs1957031	0.89[ASN][1000 genomes]
rs4332665	0.85[ASN][1000 genomes]
rs4353399	0.84[ASN][1000 genomes]
rs4433719	0.85[ASN][1000 genomes]
rs4465524	0.85[ASN][1000 genomes]
rs4981155	0.85[ASN][1000 genomes]
rs4981972	0.87[ASN][1000 genomes]
rs4981974	0.85[ASN][1000 genomes]
rs7492909	0.85[ASN][1000 genomes]
rs8004777	0.85[ASN][1000 genomes]
rs941750	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv901595	chr14:32928634-32961434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32936400-32943200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:32936400-32944800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:32936800-32944000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:32938000-32947800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:32938200-32943600	Enhancers	Rectal Smooth Muscle	rectum
6	chr14:32939400-32944800	Enhancers	Brain Angular Gyrus	brain
7	chr14:32940400-32943600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:32940400-32943600	Enhancers	Fetal Muscle Leg	muscle
9	chr14:32940600-32943000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:32940600-32943200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:32940600-32944600	Enhancers	Colon Smooth Muscle	Colon
12	chr14:32940800-32943000	Enhancers	Psoas Muscle	Psoas
13	chr14:32940800-32943200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:32940800-32943600	Enhancers	Fetal Intestine Large	intestine
15	chr14:32941000-32943000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr14:32941000-32943000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:32941000-32943200	Enhancers	Aorta	Aorta
18	chr14:32941000-32943400	Enhancers	Placenta	Placenta
19	chr14:32941200-32943000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr14:32941200-32943000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:32941200-32943000	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr14:32941200-32943000	Enhancers	Left Ventricle	heart
23	chr14:32941200-32943200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:32941200-32943200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:32941200-32943200	Enhancers	Fetal Stomach	stomach
26	chr14:32941200-32943200	Enhancers	NH-A	brain
27	chr14:32941200-32943400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:32941200-32943600	Enhancers	Liver	Liver
29	chr14:32941400-32943000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:32941400-32943000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr14:32941400-32943000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr14:32941400-32943000	Enhancers	Fetal Intestine Small	intestine
33	chr14:32941400-32943000	Enhancers	Fetal Lung	lung
34	chr14:32941400-32943200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr14:32941400-32943200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr14:32941400-32943200	Enhancers	Placenta Amnion	Placenta Amnion
37	chr14:32941400-32943400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr14:32941400-32943600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr14:32941400-32943600	Enhancers	Fetal Muscle Trunk	muscle
40	chr14:32941600-32943000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr14:32941600-32943000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:32941600-32943200	Enhancers	H9 Cell Line	embryonic stem cell
43	chr14:32941800-32943000	Enhancers	H1 Cell Line	embryonic stem cell
44	chr14:32941800-32943200	Enhancers	HepG2	liver
45	chr14:32941800-32945000	Enhancers	Brain Cingulate Gyrus	brain
46	chr14:32942000-32943000	Flanking Active TSS	A549	lung
47	chr14:32942000-32943400	Enhancers	Brain Anterior Caudate	brain
48	chr14:32942000-32944600	Enhancers	HSMM	muscle
49	chr14:32942000-32946000	Weak transcription	Right Ventricle	heart
50	chr14:32942000-32946600	Weak transcription	Esophagus	oesophagus

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