Variant report

Variant	rs4427713
Chromosome Location	chr14:32955683-32955684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10130278	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10130375	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10130385	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10131325	0.86[EUR][1000 genomes]
rs10131652	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10143760	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10143778	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12147858	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12232175	0.80[EUR][1000 genomes]
rs1951197	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1951198	0.85[ASN][1000 genomes]
rs1951199	0.81[EUR][1000 genomes]
rs1951200	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1951201	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1957031	0.85[ASN][1000 genomes]
rs1957032	0.81[EUR][1000 genomes]
rs1957033	0.81[EUR][1000 genomes]
rs1961349	0.81[EUR][1000 genomes]
rs2383333	0.83[EUR][1000 genomes]
rs4332665	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4353399	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4433719	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4465524	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4489913	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4562975	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4981155	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4981156	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4981972	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4981973	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4981974	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7160547	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7492909	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8004271	0.83[EUR][1000 genomes]
rs8004563	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8004777	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8005890	0.80[EUR][1000 genomes]
rs8010095	0.80[EUR][1000 genomes]
rs8010225	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv901595	chr14:32928634-32961434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1006050	chr14:32950054-32958354	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv974324	chr14:32950342-32961052	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv9130	chr14:32951944-32958780	Weak transcription Enhancers	TF binding region	2 gene(s)	inside rSNPs	diseases
7	esv2527143	chr14:32952224-32958055	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32947600-32962200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:32947800-32960600	Weak transcription	Fetal Brain Male	brain
3	chr14:32947800-32963400	Weak transcription	Right Atrium	heart
4	chr14:32950800-32960600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:32951400-32960600	Weak transcription	Left Ventricle	heart
6	chr14:32951600-32957000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr14:32951600-32960600	Weak transcription	Brain Substantia Nigra	brain
8	chr14:32951800-32960200	Weak transcription	Fetal Heart	heart

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