Variant report

Variant	rs1816556
Chromosome Location	chr4:96788935-96788936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10000897	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10008305	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10019264	0.84[EUR][1000 genomes]
rs1006643	0.85[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10212672	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10212751	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10212823	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1076860	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11097486	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12506801	0.84[ASN][1000 genomes]
rs13104815	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13106992	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13107501	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13114782	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13115178	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1369982	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1436535	0.84[ASN][1000 genomes]
rs1436539	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1436540	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1436552	0.86[EUR][1000 genomes]
rs1436563	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1456267	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1598570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1821736	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1836898	0.84[ASN][1000 genomes]
rs1836899	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2219277	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857209	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs3857210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6532577	0.86[EUR][1000 genomes]
rs6821954	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6840758	0.81[ASN][1000 genomes]
rs6842353	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6842388	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6842436	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6844037	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6848398	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6848743	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7659447	0.85[ASN][1000 genomes]
rs920155	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs920156	0.85[CEU][hapmap]
rs920157	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9998027	0.86[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv428767	chr4:96676384-96831793	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv879629	chr4:96747135-96818263	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv10537	chr4:96757571-96956294	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96788200-96789000	ZNF genes & repeats	Dnd41	blood
2	chr4:96788600-96790800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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