Variant report
Variant | rs2219277 |
---|---|
Chromosome Location | chr4:96780521-96780522 |
allele | A/C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10000897 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10008305 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10011321 | 0.81[EUR][1000 genomes] |
rs10019264 | 0.87[EUR][1000 genomes] |
rs10026739 | 0.90[JPT][hapmap] |
rs1006643 | 0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10212672 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs10212751 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs10212823 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1076860 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs11097486 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12506801 | 0.84[ASN][1000 genomes] |
rs13104815 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13106992 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13107501 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13114782 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs13115178 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1369982 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1436535 | 0.84[ASN][1000 genomes] |
rs1436539 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1436540 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1436552 | 0.82[EUR][1000 genomes] |
rs1816556 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1821736 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs1821737 | 0.80[JPT][hapmap] |
rs1836898 | 0.84[ASN][1000 genomes] |
rs1836899 | 0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6532577 | 0.82[EUR][1000 genomes] |
rs6821954 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6840758 | 0.81[ASN][1000 genomes] |
rs6842353 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6842388 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6842436 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6844037 | 0.86[EUR][1000 genomes] |
rs6848398 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6848743 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7659447 | 0.85[ASN][1000 genomes] |
rs920155 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs920157 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9998027 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv997304 | chr4:96575198-96861349 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
2 | nsv1010830 | chr4:96607025-96862878 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
3 | nsv537191 | chr4:96607025-96862878 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
4 | nsv594915 | chr4:96628653-97086618 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
5 | nsv428767 | chr4:96676384-96831793 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv879629 | chr4:96747135-96818263 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
7 | nsv10537 | chr4:96757571-96956294 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:96775600-96782000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |