Variant report

Variant	rs181662869
Chromosome Location	chr17:15847675-15847676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr17:15847282-15849704	K562	blood:	n/a	chr17:15848125-15848135 chr17:15848457-15848466 chr17:15849005-15849014
2	MAX	chr17:15847233-15847915	H1-hESC	embryonic stem cell:	n/a	chr17:15847670-15847681 chr17:15847670-15847681 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847670-15847680
3	MAX	chr17:15847655-15847678	HepG2	liver:	n/a	n/a
4	MXI1	chr17:15847646-15850124	IMR90	lung:	n/a	chr17:15847670-15847679 chr17:15847670-15847679
5	SIN3A	chr17:15847569-15848169	H1-hESC	embryonic stem cell:	n/a	chr17:15847670-15847679 chr17:15847935-15847943
6	MAX	chr17:15847208-15848238	H1-hESC	embryonic stem cell:	n/a	chr17:15847670-15847681 chr17:15847670-15847681 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847670-15847680
7	MAX	chr17:15847466-15847806	K562	blood:	n/a	chr17:15847670-15847681 chr17:15847670-15847681 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847670-15847680
8	USF2	chr17:15847351-15847908	H1-hESC	embryonic stem cell:	n/a	n/a
9	E2F6	chr17:15847602-15847762	K562	blood:	n/a	n/a
10	USF1	chr17:15847495-15847819	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr17:15847540-15847690	GM12871	blood:	n/a	n/a
12	CHD2	chr17:15847541-15847723	H1-hESC	embryonic stem cell:	n/a	n/a
13	MYC	chr17:15847619-15847936	H1-hESC	embryonic stem cell:	n/a	chr17:15847670-15847681 chr17:15847670-15847681 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847670-15847680
14	MAZ	chr17:15847620-15850366	IMR90	lung:	n/a	chr17:15847670-15847681 chr17:15847670-15847681 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847670-15847680
15	MYC	chr17:15847571-15849599	K562	blood:	n/a	chr17:15847670-15847681 chr17:15847670-15847681 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847670-15847680
16	MAX	chr17:15847352-15849042	H1-hESC	embryonic stem cell:	n/a	chr17:15847670-15847681 chr17:15847670-15847681 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847670-15847680
17	MAX	chr17:15847594-15847727	K562	blood:	n/a	chr17:15847670-15847681 chr17:15847670-15847681 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847670-15847680
18	E2F6	chr17:15847231-15848151	H1-hESC	embryonic stem cell:	n/a	chr17:15848125-15848135
19	USF1	chr17:15847453-15847845	H1-hESC	embryonic stem cell:	n/a	n/a
20	RAD21	chr17:15847579-15849124	SK-N-SH	brain:	n/a	chr17:15848106-15848120 chr17:15847679-15847692 chr17:15848448-15848462 chr17:15847895-15847908 chr17:15848121-15848130
21	MXI1	chr17:15847405-15849173	SK-N-SH	brain:	n/a	chr17:15847670-15847679 chr17:15847670-15847679
22	MAX	chr17:15847355-15849230	A549	lung:	n/a	chr17:15847670-15847681 chr17:15847670-15847681 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847671-15847680 chr17:15847670-15847680
23	E2F6	chr17:15847071-15849853	H1-hESC	embryonic stem cell:	n/a	chr17:15848125-15848135 chr17:15848457-15848466 chr17:15849005-15849014
24	CTCF	chr17:15847192-15849089	A549	lung:	n/a	chr17:15848121-15848129 chr17:15848525-15848541

No.	Distal block	Cell Line	Cell type
1	chr17:15842295..15844901-chr17:15846137..15847870,2	MCF-7	breast:
2	chr17:15845973..15849997-chr17:15902965..15906205,4	K562	blood:
3	chr17:15846803..15850519-chr17:15901644..15904167,3	MCF-7	breast:

Variant related genes	Relation type
ADORA2B	TF binding region
ENSG00000214941	Chromatin interaction
ENSG00000011295	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
4	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1066023	chr17:15607267-16053512	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
7	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
8	nsv1061222	chr17:15672934-15999778	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
9	nsv907706	chr17:15731923-16056442	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv1067555	chr17:15804228-16001117	Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
12	nsv1061987	chr17:15810017-15855135	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv907707	chr17:15846535-15950751	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
14	esv3402966	chr17:15847052-15849600	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15846000-15848000	Enhancers	Lung	lung
2	chr17:15846200-15847800	Weak transcription	HMEC	breast
3	chr17:15846400-15847800	Weak transcription	HUVEC	blood vessel
4	chr17:15846400-15850000	Weak transcription	Hela-S3	cervix
5	chr17:15846600-15847800	Weak transcription	Primary B cells from cord blood	blood
6	chr17:15847000-15848000	Enhancers	Placenta	Placenta
7	chr17:15847200-15848000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
8	chr17:15847200-15848200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr17:15847400-15847800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
10	chr17:15847400-15847800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:15847400-15847800	Enhancers	Primary hematopoietic stem cells	blood
12	chr17:15847400-15847800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
13	chr17:15847400-15847800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr17:15847400-15847800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
15	chr17:15847400-15847800	Bivalent Enhancer	Brain Angular Gyrus	brain
16	chr17:15847400-15847800	Enhancers	NHEK	skin
17	chr17:15847400-15848000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr17:15847400-15848200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr17:15847400-15848600	Active TSS	HepG2	liver
20	chr17:15847400-15849200	Bivalent/Poised TSS	Primary T cells from cord blood	blood
21	chr17:15847400-15849200	Active TSS	Brain Hippocampus Middle	brain
22	chr17:15847400-15849400	Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr17:15847400-15849400	Active TSS	Rectal Smooth Muscle	rectum
24	chr17:15847600-15847800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr17:15847600-15847800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr17:15847600-15847800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
27	chr17:15847600-15847800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
28	chr17:15847600-15847800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
29	chr17:15847600-15847800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr17:15847600-15847800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr17:15847600-15847800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
32	chr17:15847600-15847800	Enhancers	Liver	Liver
33	chr17:15847600-15847800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
34	chr17:15847600-15847800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
35	chr17:15847600-15847800	Enhancers	Brain Substantia Nigra	brain
36	chr17:15847600-15847800	Bivalent/Poised TSS	Colonic Mucosa	Colon
37	chr17:15847600-15847800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
38	chr17:15847600-15847800	Enhancers	Esophagus	oesophagus
39	chr17:15847600-15847800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
40	chr17:15847600-15847800	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
41	chr17:15847600-15847800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
42	chr17:15847600-15847800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
43	chr17:15847600-15847800	Bivalent Enhancer	Fetal Stomach	stomach
44	chr17:15847600-15847800	Enhancers	Placenta Amnion	Placenta Amnion
45	chr17:15847600-15847800	Bivalent/Poised TSS	Psoas Muscle	Psoas
46	chr17:15847600-15847800	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 29	rectum
47	chr17:15847600-15847800	Bivalent Enhancer	Stomach Mucosa	stomach
48	chr17:15847600-15847800	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr17:15847600-15847800	Enhancers	NH-A	brain
50	chr17:15847600-15847800	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links