Variant report
| Variant | rs1817797 |
|---|---|
| Chromosome Location | chr4:19355662-19355663 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10005806 | 0.92[ASN][1000 genomes] |
| rs12504527 | 0.82[ASN][1000 genomes] |
| rs12512065 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13151591 | 0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1388147 | 0.81[ASN][1000 genomes] |
| rs1466668 | 0.94[ASN][1000 genomes] |
| rs1490870 | 0.94[ASN][1000 genomes] |
| rs1490878 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1490881 | 0.82[ASN][1000 genomes] |
| rs1490886 | 0.82[ASN][1000 genomes] |
| rs1552659 | 0.80[ASN][1000 genomes] |
| rs1580603 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1602393 | 0.82[ASN][1000 genomes] |
| rs1844731 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1907216 | 0.81[ASN][1000 genomes] |
| rs2035775 | 0.82[ASN][1000 genomes] |
| rs2322090 | 0.80[ASN][1000 genomes] |
| rs2322091 | 0.94[ASN][1000 genomes] |
| rs312333 | 0.89[ASN][1000 genomes] |
| rs4507357 | 0.81[ASN][1000 genomes] |
| rs4697629 | 0.82[ASN][1000 genomes] |
| rs4697634 | 0.94[ASN][1000 genomes] |
| rs62298675 | 0.82[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6447901 | 0.82[ASN][1000 genomes] |
| rs6829605 | 0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6845940 | 0.82[ASN][1000 genomes] |
| rs724515 | 0.94[ASN][1000 genomes] |
| rs7662347 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1010078 | chr4:19079379-19386522 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv593785 | chr4:19092157-19521956 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv878732 | chr4:19172031-19660947 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv829872 | chr4:19268282-19432872 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv878733 | chr4:19335464-19928602 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:19351400-19367400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
