Variant report

Variant	rs62298675
Chromosome Location	chr4:19387108-19387109
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10005806	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12504527	0.82[ASN][1000 genomes]
rs12512065	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13151591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1388147	0.80[ASN][1000 genomes]
rs1466668	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1490870	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1490878	0.94[ASN][1000 genomes]
rs1490881	0.82[ASN][1000 genomes]
rs1490886	0.82[ASN][1000 genomes]
rs1552659	0.81[ASN][1000 genomes]
rs1580603	0.94[ASN][1000 genomes]
rs1602393	0.82[ASN][1000 genomes]
rs1817797	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1844731	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1907216	0.80[ASN][1000 genomes]
rs2035775	0.82[ASN][1000 genomes]
rs2322091	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs312333	0.88[ASN][1000 genomes]
rs4507357	0.81[ASN][1000 genomes]
rs4697629	0.82[ASN][1000 genomes]
rs4697634	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58232663	0.81[AFR][1000 genomes]
rs60274101	0.81[AFR][1000 genomes]
rs6447901	0.82[ASN][1000 genomes]
rs6829605	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6845940	0.82[ASN][1000 genomes]
rs724515	0.93[ASN][1000 genomes]
rs7662347	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19383400-19388400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:19383400-19388400	Weak transcription	HMEC	breast
3	chr4:19383800-19387600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:19383800-19388400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:19383800-19388600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:19385000-19388600	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links