Variant report

Variant	rs1819754
Chromosome Location	chr6:82109469-82109470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10943804	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1159210	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12193166	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12196179	0.86[ASN][1000 genomes]
rs12663202	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12663806	0.85[ASN][1000 genomes]
rs12664134	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1343241	0.85[ASN][1000 genomes]
rs1899790	0.81[ASN][1000 genomes]
rs2120535	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2197335	0.83[ASN][1000 genomes]
rs2323251	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35055394	0.84[ASN][1000 genomes]
rs4706140	0.85[ASN][1000 genomes]
rs57513743	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9294223	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9341883	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9344165	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs996136	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886328	chr6:82036764-82120647	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv34899	chr6:82090758-82161121	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2757183	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2759450	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82102600-82111400	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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