Variant report

Variant	rs182076
Chromosome Location	chr10:44559393-44559394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11238840	0.86[ASN][1000 genomes]
rs1254530	0.86[ASN][1000 genomes]
rs1254531	0.86[ASN][1000 genomes]
rs182075	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs187900	0.86[ASN][1000 genomes]
rs187901	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938557	0.86[ASN][1000 genomes]
rs268312	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs268313	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs268319	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs268321	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs268322	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs931225	0.86[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44553200-44560800	Weak transcription	Gastric	stomach
2	chr10:44553200-44561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:44556800-44561400	Weak transcription	Fetal Kidney	kidney
4	chr10:44557800-44559800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:44558600-44561200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:44558800-44560800	Weak transcription	Esophagus	oesophagus
7	chr10:44558800-44562800	Enhancers	Fetal Stomach	stomach
8	chr10:44559000-44560800	Enhancers	Stomach Smooth Muscle	stomach
9	chr10:44559000-44561600	Enhancers	Pancreas	Pancrea
10	chr10:44559000-44562600	Enhancers	Ovary	ovary
11	chr10:44559000-44563200	Enhancers	Colon Smooth Muscle	Colon
12	chr10:44559000-44563400	Enhancers	Rectal Smooth Muscle	rectum
13	chr10:44559200-44559400	Enhancers	NHDF-Ad	bronchial
14	chr10:44559200-44559600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:44559200-44559800	Enhancers	Lung	lung
16	chr10:44559200-44563200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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