Variant report

Variant	rs1824024
Chromosome Location	chr7:136643694-136643695
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:136638125..136641155-chr7:136643037..136646443,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1158586	0.96[CEU][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12155015	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1364407	0.91[CEU][hapmap];0.87[AMR][1000 genomes]
rs1364409	0.92[CEU][hapmap];0.87[AMR][1000 genomes]
rs1378645	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1378646	0.96[CEU][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1378647	0.96[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1455857	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1455858	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2350782	0.91[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2350783	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34135940	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6467695	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6467696	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6942627	0.89[AMR][1000 genomes]
rs6943656	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs6943950	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6952264	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6952499	0.85[ASN][1000 genomes]
rs6960707	0.96[CEU][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7782965	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7792449	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs978437	0.92[CEU][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136641200-136644200	Enhancers	Fetal Heart	heart
2	chr7:136642000-136644600	Weak transcription	Left Ventricle	heart
3	chr7:136642000-136649200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:136642000-136649200	Weak transcription	Fetal Stomach	stomach
5	chr7:136642000-136654600	Weak transcription	Right Atrium	heart
6	chr7:136643000-136646000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:136643000-136647400	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:136643000-136648800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:136643000-136649400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:136643200-136643800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:136643400-136643800	Strong transcription	Stomach Smooth Muscle	stomach
12	chr7:136643400-136648400	Weak transcription	NH-A	brain
13	chr7:136643600-136646000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:136643600-136647800	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links