Variant report

Variant	rs1378647
Chromosome Location	chr7:136633183-136633184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10225215	0.92[CHB][hapmap];0.81[YRI][hapmap];0.81[ASN][1000 genomes]
rs10242108	0.82[CHB][hapmap]
rs1158586	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12155015	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs1364407	0.96[CEU][hapmap];0.87[CHB][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1364409	0.96[CEU][hapmap];0.87[CHB][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1378645	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1378646	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1424386	0.83[CHB][hapmap]
rs1455857	0.96[CEU][hapmap];0.85[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1455858	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1824024	0.96[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2350780	0.82[CHB][hapmap]
rs2350783	1.00[CEU][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34135940	0.81[AMR][1000 genomes]
rs6467695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467696	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6942627	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6943950	0.84[AMR][1000 genomes]
rs6945230	0.82[CHB][hapmap]
rs6952264	1.00[CEU][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6960707	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6963819	0.82[CHB][hapmap]
rs7782965	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7792449	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs978437	0.96[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136607800-136638000	Weak transcription	NHLF	lung
2	chr7:136623400-136641600	Weak transcription	Right Ventricle	heart
3	chr7:136623600-136641600	Weak transcription	Left Ventricle	heart
4	chr7:136631600-136636400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:136631800-136635800	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:136632400-136633400	Enhancers	Fetal Heart	heart
7	chr7:136632600-136633400	Enhancers	Adipose Nuclei	Adipose
8	chr7:136632600-136633800	Enhancers	Right Atrium	heart
9	chr7:136633000-136633600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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