Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PTN-2	chr7:136586653-136588123	ENSG00000234352.5

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10228048	0.87[CHB][hapmap]
rs10242108	1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs10488599	0.86[CHB][hapmap]
rs1158586	0.86[CHB][hapmap]
rs1364403	0.85[ASW][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1364407	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs1364409	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs1378646	0.86[CHB][hapmap]
rs1378647	0.82[CHB][hapmap]
rs1424386	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1455858	0.82[CHB][hapmap]
rs2350780	0.80[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4475425	0.91[CHB][hapmap]
rs6467695	0.82[CHB][hapmap]
rs6945230	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6945736	0.82[CHB][hapmap]
rs6960707	0.81[CHB][hapmap]
rs6969811	0.91[CHB][hapmap]
rs7777727	0.91[CHB][hapmap]
rs7782965	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs960677	0.82[CHB][hapmap];0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136585400-136592400	Weak transcription	Fetal Heart	heart
3	chr7:136585400-136595200	Weak transcription	Right Ventricle	heart
4	chr7:136587200-136588200	Enhancers	Stomach Smooth Muscle	stomach
5	chr7:136587400-136588200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search: