Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10228048	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10242108	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs10488599	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs10488600	0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1111418	0.85[JPT][hapmap];0.84[TSI][hapmap]
rs1364408	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1424386	0.82[CHB][hapmap]
rs1424546	0.85[JPT][hapmap]
rs17168815	0.88[JPT][hapmap]
rs17168819	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs2350780	0.82[CHB][hapmap];0.86[CHD][hapmap]
rs4475425	0.86[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap];0.81[LWK][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6943656	0.84[JPT][hapmap]
rs6945230	0.86[CHB][hapmap]
rs6945736	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6963819	0.82[CHB][hapmap];0.83[CHD][hapmap]
rs6969811	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs73158705	0.87[ASN][1000 genomes]
rs73158724	0.99[ASN][1000 genomes]
rs73158732	0.84[ASN][1000 genomes]
rs7777727	0.86[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7806357	0.86[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136588200-136605600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:136595000-136602000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:136596400-136607200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:136599800-136604400	Weak transcription	Fetal Heart	heart

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