Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10228048	0.83[JPT][hapmap]
rs10267979	0.98[ASN][1000 genomes]
rs10488599	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs10488600	0.89[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1111418	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs1364408	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1424546	0.84[JPT][hapmap]
rs17168819	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58394792	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943656	0.89[CEU][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6945736	0.83[JPT][hapmap]
rs6969811	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs73158732	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73158742	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73158743	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73158749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73158750	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7777727	0.82[JPT][hapmap]
rs7806357	0.95[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs960677	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv981586	chr7:136622695-136626358	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136607800-136638000	Weak transcription	NHLF	lung
2	chr7:136620600-136624800	Enhancers	Fetal Heart	heart
3	chr7:136623400-136627800	Enhancers	Colon Smooth Muscle	Colon
4	chr7:136623400-136641600	Weak transcription	Right Ventricle	heart
5	chr7:136623600-136626200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:136623600-136626400	Enhancers	Rectal Smooth Muscle	rectum
7	chr7:136623600-136641600	Weak transcription	Left Ventricle	heart

Quick Search: