Variant report

Variant	rs73158732
Chromosome Location	chr7:136606172-136606173
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10228048	0.81[ASN][1000 genomes]
rs10267979	0.91[ASN][1000 genomes]
rs10488599	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10488600	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1364408	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17168815	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17168819	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58394792	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6943656	0.83[AMR][1000 genomes]
rs6945736	0.84[ASN][1000 genomes]
rs6969811	0.80[EUR][1000 genomes]
rs73158705	0.88[EUR][1000 genomes]
rs73158724	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73158742	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73158743	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73158749	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73158750	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7806357	0.91[ASN][1000 genomes]
rs960677	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136596400-136607200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:136601600-136609600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:136603800-136609400	Weak transcription	Fetal Stomach	stomach
5	chr7:136604400-136606400	Genic enhancers	Fetal Heart	heart
6	chr7:136604400-136607600	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:136605200-136612200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:136605400-136610600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr7:136605600-136606200	Strong transcription	Stomach Smooth Muscle	stomach
10	chr7:136605800-136607400	Weak transcription	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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