Variant report

Variant	rs73158705
Chromosome Location	chr7:136576100-136576101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10228048	0.94[ASN][1000 genomes]
rs10488599	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10488600	0.82[EUR][1000 genomes]
rs4475425	0.99[ASN][1000 genomes]
rs6945736	0.87[ASN][1000 genomes]
rs6969811	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73158724	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73158732	0.88[EUR][1000 genomes]
rs7777727	0.94[ASN][1000 genomes]
rs960677	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136569000-136577800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:136569400-136579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:136569600-136577800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:136570200-136577800	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:136570800-136577800	Weak transcription	Fetal Stomach	stomach
7	chr7:136571200-136576800	Enhancers	Fetal Heart	heart
8	chr7:136574200-136576600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:136575200-136577200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr7:136575400-136577200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:136575600-136577800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:136576000-136576400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:136576000-136577000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr7:136576000-136577200	Enhancers	HUES48 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links