Variant report

Variant	rs10488600
Chromosome Location	chr7:136605458-136605459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10228048	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs10267979	0.90[ASN][1000 genomes]
rs10488599	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1111418	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1364407	0.90[CHD][hapmap]
rs1364408	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1424546	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs17168815	0.89[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17168819	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4475425	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs58394792	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6943656	0.84[JPT][hapmap]
rs6945230	0.82[CHB][hapmap]
rs6945736	0.90[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6969811	0.92[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs73158705	0.82[EUR][1000 genomes]
rs73158724	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73158732	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73158742	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73158743	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73158749	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73158750	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7777727	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs7806357	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs960677	0.90[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136588200-136605600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:136596400-136607200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:136601600-136609600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:136603800-136609400	Weak transcription	Fetal Stomach	stomach
6	chr7:136604400-136605800	Enhancers	NHLF	lung
7	chr7:136604400-136606400	Genic enhancers	Fetal Heart	heart
8	chr7:136604400-136607600	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:136605200-136605800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr7:136605200-136612200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:136605400-136610600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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