Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10228048	0.82[CHB][hapmap]
rs10242108	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs10488599	0.80[CHB][hapmap]
rs10488600	0.82[CHB][hapmap]
rs1158586	0.87[CHB][hapmap]
rs1364407	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1364409	0.95[CHB][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1378646	0.87[CHB][hapmap]
rs1378647	0.82[CHB][hapmap]
rs1424386	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1455858	0.82[CHB][hapmap]
rs2350780	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4475425	0.86[CHB][hapmap]
rs6467695	0.82[CHB][hapmap]
rs6945736	0.87[CHB][hapmap]
rs6960707	0.81[CHB][hapmap]
rs6963819	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6969811	0.87[CHB][hapmap]
rs7777727	0.87[CHB][hapmap]
rs7782965	0.95[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes]
rs7792449	0.81[ASN][1000 genomes]
rs960677	0.86[CHB][hapmap]
rs978437	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136558000-136609200	Weak transcription	Left Ventricle	heart
2	chr7:136588200-136605600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:136592400-136597400	Enhancers	Fetal Heart	heart
4	chr7:136595000-136602000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:136596400-136607200	Weak transcription	Rectal Smooth Muscle	rectum

Quick Search: